NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J53_RS17435	Genome accession	NZ_CP163443
Coordinates	3770002..3770682 (-)	Length	226 a.a.
NCBI ID	WP_369246574.1	Uniprot ID	-
Organism	Streptomyces sp. R41
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3765002..3775682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J53_RS17425 (AB5J53_17425)	-	3767086..3768027 (+)	942	WP_369246573.1	hypothetical protein	-
AB5J53_RS17430 (AB5J53_17430)	clpX	3768555..3769841 (-)	1287	WP_189185069.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J53_RS17435 (AB5J53_17435)	clpP	3770002..3770682 (-)	681	WP_369246574.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17440 (AB5J53_17440)	clpP	3770801..3771409 (-)	609	WP_362018419.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17445 (AB5J53_17445)	tig	3771832..3773232 (-)	1401	WP_369246575.1	trigger factor	-
AB5J53_RS17460 (AB5J53_17460)	-	3773955..3774653 (-)	699	WP_369246576.1	SDR family NAD(P)-dependent oxidoreductase	-
AB5J53_RS17465 (AB5J53_17465)	-	3774823..3775143 (+)	321	WP_369252290.1	winged helix-turn-helix transcriptional regulator	-
AB5J53_RS17470 (AB5J53_17470)	-	3775316..3775510 (-)	195	WP_016435177.1	hypothetical protein	-

Sequence

Protein

Download Length: 226 a.a. Molecular weight: 24942.41 Da Isoelectric Point: 4.7288

                                >NTDB_id=925516 AB5J53_RS17435 WP_369246574.1 3770002..3770682(-) (clpP) [Streptomyces sp. R41]

MNDFPGSGLHARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP

DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD

LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNSSAIV

Nucleotide

Download Length: 681 bp

                                >NTDB_id=925516 AB5J53_RS17435 WP_369246574.1 3770002..3770682(-) (clpP) [Streptomyces sp. R41]

GTGAACGACTTCCCCGGCAGCGGCCTCCACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT

CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA

TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC

GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCTTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT

CGTGAAGCCCGACATTCAGACGGTCTGCATGGGCCAGGCGGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG

GCAAGCGCATGGCGCTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC

CTCGAAATCGCCGCGAACGAGATCCTCCGGATGCGCGCGCAGCTGGAAGAGATGCTGGCCAAGCACTCGACCACGCCGAT

CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTCGCGTACGGCCTGATCGACCAGA

TCATCTCCACCCGCAAGATGAACAGTTCCGCGATCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.105	84.071	0.438
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	83.186	0.412
clpP	Streptococcus thermophilus LMD-9	46.154	86.283	0.398
clpP	Streptococcus thermophilus LMG 18311	46.154	86.283	0.398
clpP	Streptococcus mutans UA159	45.226	88.053	0.398
clpP	Streptococcus pyogenes MGAS315	45.128	86.283	0.389
clpP	Streptococcus pyogenes JRS4	45.128	86.283	0.389
clpP	Streptococcus pneumoniae D39	44.388	86.726	0.385
clpP	Streptococcus pneumoniae R6	44.388	86.726	0.385
clpP	Streptococcus pneumoniae TIGR4	44.388	86.726	0.385
clpP	Lactococcus lactis subsp. cremoris KW2	44.388	86.726	0.385
clpP	Streptococcus pneumoniae Rx1	44.388	86.726	0.385
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	43.367	86.726	0.376

Detailed information NTG0925516