NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J50_RS17940	Genome accession	NZ_CP163440
Coordinates	3916973..3917578 (-)	Length	201 a.a.
NCBI ID	WP_327435020.1	Uniprot ID	A0ABW2VLA0
Organism	Streptomyces sp. R35
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3911973..3922578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J50_RS17925 (AB5J50_17925)	-	3913579..3914544 (+)	966	WP_369259231.1	hypothetical protein	-
AB5J50_RS17930 (AB5J50_17930)	clpX	3914739..3916025 (-)	1287	WP_369259233.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J50_RS17935 (AB5J50_17935)	clpP	3916186..3916866 (-)	681	WP_369259235.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J50_RS17940 (AB5J50_17940)	clpP	3916973..3917578 (-)	606	WP_327435020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J50_RS17945 (AB5J50_17945)	tig	3918013..3919413 (-)	1401	WP_369259237.1	trigger factor	-
AB5J50_RS17960 (AB5J50_17960)	-	3920016..3920522 (-)	507	WP_369259239.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21279.26 Da Isoelectric Point: 4.6747

                                >NTDB_id=925336 AB5J50_RS17940 WP_327435020.1 3916973..3917578(-) (clpP) [Streptomyces sp. R35]

MPTAAGEPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI

KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ

ITKDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=925336 AB5J50_RS17940 WP_327435020.1 3916973..3917578(-) (clpP) [Streptomyces sp. R35]

ATGCCCACAGCTGCCGGCGAGCCTATCGGTGGTGGTCTCGGTGACCAGGTCTACAACCGGCTGCTCGGCGAGCGAATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACTGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACCATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACCTCCTTCCACACGGGCCAGACCGTGGAGCAG

ATCACCAAGGACTCCGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC

CACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.08	93.035	0.512
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	94.03	0.498
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.381	94.03	0.493
clpP	Streptococcus mutans UA159	52.381	94.03	0.493
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.172	86.567	0.478
clpP	Streptococcus pyogenes MGAS315	49.735	94.03	0.468
clpP	Streptococcus pyogenes JRS4	49.735	94.03	0.468
clpP	Streptococcus thermophilus LMG 18311	48.677	94.03	0.458
clpP	Streptococcus thermophilus LMD-9	48.677	94.03	0.458
clpP	Streptococcus pneumoniae Rx1	48.148	94.03	0.453
clpP	Streptococcus pneumoniae D39	48.148	94.03	0.453
clpP	Streptococcus pneumoniae R6	48.148	94.03	0.453
clpP	Streptococcus pneumoniae TIGR4	48.148	94.03	0.453

Detailed information NTG0925336