Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J50_RS17935 Genome accession   NZ_CP163440
Coordinates   3916186..3916866 (-) Length   226 a.a.
NCBI ID   WP_369259235.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3911186..3921866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS17925 (AB5J50_17925) - 3913579..3914544 (+) 966 WP_369259231.1 hypothetical protein -
  AB5J50_RS17930 (AB5J50_17930) clpX 3914739..3916025 (-) 1287 WP_369259233.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J50_RS17935 (AB5J50_17935) clpP 3916186..3916866 (-) 681 WP_369259235.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J50_RS17940 (AB5J50_17940) clpP 3916973..3917578 (-) 606 WP_327435020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J50_RS17945 (AB5J50_17945) tig 3918013..3919413 (-) 1401 WP_369259237.1 trigger factor -
  AB5J50_RS17960 (AB5J50_17960) - 3920016..3920522 (-) 507 WP_369259239.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24967.42 Da        Isoelectric Point: 4.6288

>NTDB_id=925335 AB5J50_RS17935 WP_369259235.1 3916186..3916866(-) (clpP) [Streptomyces sp. R35]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=925335 AB5J50_RS17935 WP_369259235.1 3916186..3916866(-) (clpP) [Streptomyces sp. R35]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCACTCACTGCGATTTACGACACGATGCAGTT
CGTGAAGCCTGACATTCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCTGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCTGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCGGCGGTTGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385