Detailed information NTG0925334

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J50_RS17930
• Genome accession: NZ_CP163440
• Coordinates: 3914739..3916025 (-)
• Length: 428 a.a.
• NCBI ID: WP_369259233.1
• Uniprot ID: -
• Organism: Streptomyces sp. R35
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3909739..3921025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J50_RS17920 (AB5J50_17920)	-	3910818..3913442 (-)	2625	WP_369259229.1	valine--tRNA ligase	-
AB5J50_RS17925 (AB5J50_17925)	-	3913579..3914544 (+)	966	WP_369259231.1	hypothetical protein	-
AB5J50_RS17930 (AB5J50_17930)	clpX	3914739..3916025 (-)	1287	WP_369259233.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J50_RS17935 (AB5J50_17935)	clpP	3916186..3916866 (-)	681	WP_369259235.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J50_RS17940 (AB5J50_17940)	clpP	3916973..3917578 (-)	606	WP_327435020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J50_RS17945 (AB5J50_17945)	tig	3918013..3919413 (-)	1401	WP_369259237.1	trigger factor	-
AB5J50_RS17960 (AB5J50_17960)	-	3920016..3920522 (-)	507	WP_369259239.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 47000.79 Da
• Isoelectric Point: 4.8249

>NTDB_id=925334 AB5J50_RS17930 WP_369259233.1 3914739..3916025(-) (clpX) [Streptomyces sp. R35]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSTGQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKLIESRAGAKGIGFGATIRSKRELQSKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARRGGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=925334 AB5J50_RS17930 WP_369259233.1 3914739..3916025(-) (clpX) [Streptomyces sp. R35]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAAACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGTCG
GCCAAGAAGGCGCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACAGCACGGGTCAAAACCG
CGACGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTCGGCCCCACGGGCTCGGGCAAGACGCTCCTGGCCCAGA
CACTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTGGAGAACATCCTGCTCAAGCTCATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCTCGCAAGAGCGAGAACCCGTCGATCACGCGGGATGTGTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTCGAAGGAACGACGGCCTCGGTTCCGCCCCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCGGGCCTGGAGAAGCTCATCGAGTCGCGGGCGGGAGC
GAAGGGGATCGGCTTCGGCGCGACGATCCGCTCCAAGCGGGAACTGCAGTCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTCCCGGTCATCACGTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAACTCGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGAGGCCTGC
GCGCCATCATGGAGGAAGTCCTCATGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACG
GCGGACGTCGTTCACTCGAACGTGAACCCGACGCTGATTCCGCGCGACGCTCGCCGCGGGGGGCCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521