Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J56_RS29550 Genome accession   NZ_CP163435
Coordinates   6623070..6623675 (+) Length   201 a.a.
NCBI ID   WP_369242877.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6618070..6628675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS29525 (AB5J56_29525) - 6618210..6618404 (+) 195 WP_327428706.1 hypothetical protein -
  AB5J56_RS29530 (AB5J56_29530) - 6618495..6620627 (+) 2133 WP_369236750.1 serine/threonine-protein kinase -
  AB5J56_RS29545 (AB5J56_29545) tig 6621257..6622648 (+) 1392 WP_369236752.1 trigger factor -
  AB5J56_RS29550 (AB5J56_29550) clpP 6623070..6623675 (+) 606 WP_369242877.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J56_RS29555 (AB5J56_29555) clpP 6623761..6624441 (+) 681 WP_369236754.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J56_RS29560 (AB5J56_29560) clpX 6624602..6625888 (+) 1287 WP_369236756.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J56_RS29565 (AB5J56_29565) - 6626471..6627430 (-) 960 WP_369236758.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21229.19 Da        Isoelectric Point: 4.6663

>NTDB_id=925197 AB5J56_RS29550 WP_369242877.1 6623070..6623675(+) (clpP) [Streptomyces sp. R21]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKEYGLIDDIVPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=925197 AB5J56_RS29550 WP_369242877.1 6623070..6623675(+) (clpP) [Streptomyces sp. R21]
ATGCCCACAGCCGCCGGCGACCCCATCGGTGGGGGCCTCGGTGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTCGCGGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGTCAGACCGTCGAGCAG
ATCACTCGTGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCGTGCC
CACCGCTGCCGGTATGCCGGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.684

93.035

0.527
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443