Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J55_RS14220 Genome accession   NZ_CP163432
Coordinates   3136701..3137306 (-) Length   201 a.a.
NCBI ID   WP_328430572.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131701..3142306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS14205 (AB5J55_14205) - 3133424..3134413 (+) 990 WP_369271030.1 hypothetical protein -
  AB5J55_RS14210 (AB5J55_14210) clpX 3134483..3135769 (-) 1287 WP_369271031.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J55_RS14215 (AB5J55_14215) clpP 3135950..3136630 (-) 681 WP_369271032.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J55_RS14220 (AB5J55_14220) clpP 3136701..3137306 (-) 606 WP_328430572.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J55_RS14225 (AB5J55_14225) tig 3137578..3138972 (-) 1395 WP_369271033.1 trigger factor -
  AB5J55_RS14240 (AB5J55_14240) - 3139527..3140660 (-) 1134 WP_369271034.1 tyrosine-type recombinase/integrase -
  AB5J55_RS14245 (AB5J55_14245) - 3140660..3140869 (-) 210 WP_369271035.1 excisionase family DNA-binding protein -
  AB5J55_RS14250 (AB5J55_14250) repSA 3140872..3142293 (-) 1422 WP_369271036.1 replication initiator protein RepSA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21274.19 Da        Isoelectric Point: 4.6831

>NTDB_id=925009 AB5J55_RS14220 WP_328430572.1 3136701..3137306(-) (clpP) [Streptomyces sp. R11]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSIE
QITRDSDRDRWFDAFEAKEYGLIDDVMPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=925009 AB5J55_RS14220 WP_328430572.1 3136701..3137306(-) (clpP) [Streptomyces sp. R11]
ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACTGCGCAGCTGCTGCTCCTTGCCGCCGAACCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCGATGGGACAGTTCCTGCTCAGCGCGGGTACCCCGGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCCGGCTCGGCCTCCGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACGAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGTCGATCGAG
CAGATCACTCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGAT
GCCCACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

85.075

0.498
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.542

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

90.547

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.542

0.483
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438