Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J55_RS14215 Genome accession   NZ_CP163432
Coordinates   3135950..3136630 (-) Length   226 a.a.
NCBI ID   WP_369271032.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130950..3141630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS14205 (AB5J55_14205) - 3133424..3134413 (+) 990 WP_369271030.1 hypothetical protein -
  AB5J55_RS14210 (AB5J55_14210) clpX 3134483..3135769 (-) 1287 WP_369271031.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J55_RS14215 (AB5J55_14215) clpP 3135950..3136630 (-) 681 WP_369271032.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J55_RS14220 (AB5J55_14220) clpP 3136701..3137306 (-) 606 WP_328430572.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J55_RS14225 (AB5J55_14225) tig 3137578..3138972 (-) 1395 WP_369271033.1 trigger factor -
  AB5J55_RS14240 (AB5J55_14240) - 3139527..3140660 (-) 1134 WP_369271034.1 tyrosine-type recombinase/integrase -
  AB5J55_RS14245 (AB5J55_14245) - 3140660..3140869 (-) 210 WP_369271035.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25101.46 Da        Isoelectric Point: 4.5790

>NTDB_id=925008 AB5J55_RS14215 WP_369271032.1 3135950..3136630(-) (clpP) [Streptomyces sp. R11]
MNDFPGSSLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=925008 AB5J55_RS14215 WP_369271032.1 3135950..3136630(-) (clpP) [Streptomyces sp. R11]
GTGAACGACTTCCCCGGCAGCAGCCTGTACGACCGCACGCGCGCCGAGTACACGGGTCCCGCCGCCGAGTCCCGCTACGT
CATCCCGCGGTTCGTGGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAATGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCGGGTGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCGAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCCGAGGACGCGCTGTCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTTCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376