Detailed information NTG0092495

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: Llc71_RS01895
• Genome accession: NZ_AP025520
• Coordinates: 375115..375504 (+)
• Length: 129 a.a.
• NCBI ID: WP_248536845.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain 7-1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	375115..386723	375115..375504	within	0

Gene organization within MGE regions

Location: 375115..386723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Llc71_RS01895 (Llc71_03670)	ssbB	375115..375504 (+)	390	WP_248536845.1	single-stranded DNA-binding protein	Machinery gene
Llc71_RS01900 (Llc71_03680)	groES	375623..375907 (+)	285	WP_011834459.1	co-chaperone GroES	-
Llc71_RS01905 (Llc71_03690)	groL	375994..377622 (+)	1629	WP_046124161.1	chaperonin GroEL	-
Llc71_RS01910 (Llc71_03700)	-	377672..378484 (-)	813	WP_011675466.1	MBL fold metallo-hydrolase	-
Llc71_RS01915 (Llc71_03720)	-	378675..380030 (-)	1356	WP_171031409.1	ATP-binding protein	-
Llc71_RS01920 (Llc71_03730)	yycF	380095..380796 (-)	702	WP_003131580.1	response regulator YycF	-
Llc71_RS01925 (Llc71_03740)	tmk	380974..381609 (+)	636	WP_248536846.1	dTMP kinase	-
Llc71_RS01930 (Llc71_03750)	-	381742..382602 (+)	861	WP_011834463.1	DNA polymerase III subunit delta'	-
Llc71_RS01935 (Llc71_03760)	-	382652..383434 (+)	783	WP_011834464.1	stage 0 sporulation family protein	-
Llc71_RS01940 (Llc71_03770)	yabA	383427..383753 (+)	327	WP_011675472.1	DNA replication initiation control protein YabA	-
Llc71_RS01945 (Llc71_03780)	rsmI	383753..384628 (+)	876	WP_011834466.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
Llc71_RS01950 (Llc71_03790)	-	384706..384897 (-)	192	WP_011834467.1	hypothetical protein	-
Llc71_RS01955 (Llc71_03800)	-	384972..385781 (-)	810	WP_248536847.1	ABC transporter permease	-
Llc71_RS01960 (Llc71_03810)	-	385794..386723 (-)	930	WP_248536848.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 129 a.a.
• Molecular weight: 14681.75 Da
• Isoelectric Point: 8.3705

>NTDB_id=92495 Llc71_RS01895 WP_248536845.1 375115..375504(+) (ssbB) [Lactococcus cremoris strain 7-1]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEEPLLEADELPF

Nucleotide

• Length: 390 bp

>NTDB_id=92495 Llc71_RS01895 WP_248536845.1 375115..375504(+) (ssbB) [Lactococcus cremoris strain 7-1]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACCCTTACTTGAAGCTGATGAGCTCCCTTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Lactococcus lactis subsp. cremoris KW2	98.45	100	0.985
ssbB	Streptococcus sobrinus strain NIDR 6715-7	60.769	100	0.612
ssbB/cilA	Streptococcus pneumoniae TIGR4	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae Rx1	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae D39	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae R6	55.385	100	0.558
ssbB/cilA	Streptococcus mitis NCTC 12261	55.385	100	0.558
ssbB/cilA	Streptococcus mitis SK321	55.385	100	0.558
ssbA	Streptococcus mutans UA159	53.846	100	0.543
ssb	Latilactobacillus sakei subsp. sakei 23K	42.857	86.822	0.372