Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J58_RS05600 Genome accession   NZ_CP163431
Coordinates   1170593..1171273 (+) Length   226 a.a.
NCBI ID   WP_328831439.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165593..1176273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS05570 (AB5J58_05570) - 1166047..1167180 (-) 1134 WP_352112499.1 acyltransferase family protein -
  AB5J58_RS05575 (AB5J58_05575) - 1167484..1167678 (+) 195 WP_026178055.1 hypothetical protein -
  AB5J58_RS05590 (AB5J58_05590) tig 1168280..1169674 (+) 1395 WP_369186729.1 trigger factor -
  AB5J58_RS05595 (AB5J58_05595) clpP 1169941..1170543 (+) 603 WP_033285987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J58_RS05600 (AB5J58_05600) clpP 1170593..1171273 (+) 681 WP_328831439.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J58_RS05605 (AB5J58_05605) clpX 1171434..1172720 (+) 1287 WP_266768669.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J58_RS05610 (AB5J58_05610) - 1172799..1173806 (-) 1008 WP_369186730.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25025.41 Da        Isoelectric Point: 4.5670

>NTDB_id=924903 AB5J58_RS05600 WP_328831439.1 1170593..1171273(+) (clpP) [Streptomyces sp. R08]
MNDFPGTGLYDRARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIDKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=924903 AB5J58_RS05600 WP_328831439.1 1170593..1171273(+) (clpP) [Streptomyces sp. R08]
GTGAACGACTTCCCCGGCACCGGCCTGTACGACCGCGCACGCGCCGAATACACGGCCCCCGCCGCCGAGTCCCGTTATGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCCATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAACGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGGGGCCAGGTCTCCGAC
CTCGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

86.726

0.372