Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J58_RS05595 Genome accession   NZ_CP163431
Coordinates   1169941..1170543 (+) Length   200 a.a.
NCBI ID   WP_033285987.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164941..1175543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS05565 (AB5J58_05565) - 1165581..1166036 (+) 456 WP_369186728.1 HD domain-containing protein -
  AB5J58_RS05570 (AB5J58_05570) - 1166047..1167180 (-) 1134 WP_352112499.1 acyltransferase family protein -
  AB5J58_RS05575 (AB5J58_05575) - 1167484..1167678 (+) 195 WP_026178055.1 hypothetical protein -
  AB5J58_RS05590 (AB5J58_05590) tig 1168280..1169674 (+) 1395 WP_369186729.1 trigger factor -
  AB5J58_RS05595 (AB5J58_05595) clpP 1169941..1170543 (+) 603 WP_033285987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J58_RS05600 (AB5J58_05600) clpP 1170593..1171273 (+) 681 WP_328831439.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J58_RS05605 (AB5J58_05605) clpX 1171434..1172720 (+) 1287 WP_266768669.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J58_RS05610 (AB5J58_05610) - 1172799..1173806 (-) 1008 WP_369186730.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21139.05 Da        Isoelectric Point: 4.6747

>NTDB_id=924902 AB5J58_RS05595 WP_033285987.1 1169941..1170543(+) (clpP) [Streptomyces sp. R08]
MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSIEQ
ITRDSDRDRWFDALEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=924902 AB5J58_RS05595 WP_033285987.1 1169941..1170543(+) (clpP) [Streptomyces sp. R08]
ATGCCTACAGCCGCCGGCGAGCCCTCCATCGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTCCTGCTCCTTGCCGCTGACCCCGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA
TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG
ATCACCCGCGACTCCGACCGCGACCGCTGGTTCGACGCGCTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATTCC
CACGGCCGCCGGTATGCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.15

93.5

0.525
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

94.5

0.5
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.381

94.5

0.495
  clpP Streptococcus mutans UA159

52.381

94.5

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Streptococcus pyogenes MGAS315

49.735

94.5

0.47
  clpP Streptococcus pyogenes JRS4

49.735

94.5

0.47
  clpP Streptococcus thermophilus LMG 18311

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMD-9

49.206

94.5

0.465
  clpP Streptococcus pneumoniae Rx1

48.677

94.5

0.46
  clpP Streptococcus pneumoniae D39

48.677

94.5

0.46
  clpP Streptococcus pneumoniae R6

48.677

94.5

0.46
  clpP Streptococcus pneumoniae TIGR4

48.677

94.5

0.46