Detailed information NTG0924904

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J58_RS05605
• Genome accession: NZ_CP163431
• Coordinates: 1171434..1172720 (+)
• Length: 428 a.a.
• NCBI ID: WP_266768669.1
• Uniprot ID: -
• Organism: Streptomyces sp. R08
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1166434..1177720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J58_RS05575 (AB5J58_05575)	-	1167484..1167678 (+)	195	WP_026178055.1	hypothetical protein	-
AB5J58_RS05590 (AB5J58_05590)	tig	1168280..1169674 (+)	1395	WP_369186729.1	trigger factor	-
AB5J58_RS05595 (AB5J58_05595)	clpP	1169941..1170543 (+)	603	WP_033285987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J58_RS05600 (AB5J58_05600)	clpP	1170593..1171273 (+)	681	WP_328831439.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J58_RS05605 (AB5J58_05605)	clpX	1171434..1172720 (+)	1287	WP_266768669.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J58_RS05610 (AB5J58_05610)	-	1172799..1173806 (-)	1008	WP_369186730.1	hypothetical protein	-
AB5J58_RS05615 (AB5J58_05615)	-	1173943..1176567 (+)	2625	WP_369186731.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46841.63 Da
• Isoelectric Point: 4.7360

>NTDB_id=924904 AB5J58_RS05605 WP_266768669.1 1171434..1172720(+) (clpX) [Streptomyces sp. R08]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELQSKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=924904 AB5J58_RS05605 WP_266768669.1 1171434..1172720(+) (clpX) [Streptomyces sp. R08]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTAGAGGGGTACGTCGTCGGCCAGGAGTCG
GCGAAGAAGGCGCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGTCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCGCAGA
CCCTGGCCCGCATGCTGAACGTGCCGTTCGCGATCGCCGACGCGACCGCGCTCACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACGGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGAGCGGAGAAGGCGTCCAGCAGGCCC
TGTTGAAGATCCTTGAGGGCACCACGGCCTCCGTCCCGCCGCAGGGCGGCCGGAAACACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCTTTCGCGGGCCTGGAGAAGCTCATCGAGTCCAGGGCCGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGGGAGCTGCAGTCGAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGGCGTCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCACTCGTCAAGCAGTACGAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGGGTCGTCATCACG
GCGGACGTGGTCCTGTCGAACGTCAACCCGACCCTGATCCCGCGCGACGCACGCGGCCGGGGCCCGGGCGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.189	93.925	0.584
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516