Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCU90_RS14460 Genome accession   NZ_AP025508
Coordinates   3278595..3279824 (+) Length   409 a.a.
NCBI ID   WP_004735441.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3273595..3284824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS14440 ampD 3274630..3275229 (-) 600 WP_061022512.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OCU90_RS14445 nadC 3275313..3276203 (+) 891 WP_061022514.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCU90_RS14450 - 3276459..3276893 (+) 435 WP_061022516.1 pilin -
  OCU90_RS14455 pilB 3276894..3278579 (+) 1686 WP_061022518.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU90_RS14460 pilC 3278595..3279824 (+) 1230 WP_004735441.1 type II secretion system F family protein Machinery gene
  OCU90_RS14465 pilD 3279892..3280761 (+) 870 WP_061022520.1 A24 family peptidase Machinery gene
  OCU90_RS14470 coaE 3280764..3281378 (+) 615 WP_061022521.1 dephospho-CoA kinase -
  OCU90_RS14475 zapD 3281405..3282145 (+) 741 WP_017087400.1 cell division protein ZapD -
  OCU90_RS14480 yacG 3282227..3282424 (+) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  OCU90_RS14485 rplS 3282772..3283125 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  OCU90_RS14490 trmD 3283185..3283925 (-) 741 WP_004735512.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCU90_RS14495 rimM 3283952..3284506 (-) 555 WP_004735510.1 ribosome maturation factor RimM -
  OCU90_RS14500 rpsP 3284531..3284779 (-) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45352.30 Da        Isoelectric Point: 10.2353

>NTDB_id=92315 OCU90_RS14460 WP_004735441.1 3278595..3279824(+) (pilC) [Vibrio splendidus strain LMG 19031]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYSAIGIGLLIL
SFQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=92315 OCU90_RS14460 WP_004735441.1 3278595..3279824(+) (pilC) [Vibrio splendidus strain LMG 19031]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAGTGTCTGG
GCAGAGCTTAGCGCTCACCGAACTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCACATTCAGATTAAGAAAATCAAAAAGA
AAAGCATCTCAGCAATCACTCGTTTAACCCATCGAGTCAAAGCCAAAGACATCACTATTTTGACTCGCCAACTGGCTACC
ATGTTGGCGACTGGTGTGCCGATCGTGCAAGCCATCAAGCTGGTGTCAGACAATCACCGCAAAGCAGAAATGAAATCGAT
TTTATCGCACATCTGCAAAGGTGTAGAAGCTGGCACGCCAATCTCAAAAGCAATGCGAACTGCAAGCCGCCACTTTGATG
ACCTCTATACCGACTTGGTCGCGACAGGCGAACTCTCCGGCAACCTTGCACAAGTATTTGAACGCTTGGCGACCTATCGT
GAAAAGAGTGAGCAACTAAAATCCAAGGTTATAAAAGCGCTCATCTATCCTGCAATGGTTGTTGCGGTCGCCCTTACCGT
TTCCTACTTAATGCTGACCATGGTCATCCCTGAATTTGAATCGATGTTTTCTGGTTTCGGAGCAGACTTACCTTGGTTCA
CCCAGCAAGTGCTTTATCTTTCCCATTGGATGCAGGCTTATAGTTTCTATAGTGCCATCGGTATTGGTTTATTAATTCTG
TCTTTTCAGCAACTGCGTCAGCGATCCTACTCGATTCGACTTTCAACCAGTCGTCTTGGCTTACGCTTTCCTATCTTGGG
TGCTGTTATCACTAAGGCATCGATTGCAAAGTTCAGCCGAACACTTTCAACCAGTTTCAGTTCTGGGATTCCCATCTTAA
CCAGCCTTAAAACAACGGCTAAAACCGCAGGCAACCTGCATTATGAATCGGCCATCATCGAGGTTCACCGTGAAACTGCC
GCAGGCATGCCTATGTACATTGCAATGCGCAATACCAATGCCTTCCCAGAGATGGTTTTACAGATGGTGATGATAGGTGA
AGAGTCAGGGAATCTTGATGATATGCTCAATAAAGTCGCTTCCATTTACGAGTTCGAAGTAGACAACACCGTCGATAACC
TAGGTAAAATTCTAGAACCACTGATCATCGTATTTTTAGGCACCGTAGTTGGCGGACTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81

97.8

0.792
  pilC Vibrio campbellii strain DS40M4

74.384

99.267

0.738
  pilC Acinetobacter baylyi ADP1

42.543

100

0.425
  pilC Acinetobacter baumannii D1279779

42.574

98.778

0.421
  pilC Legionella pneumophila strain ERS1305867

41.855

97.555

0.408
  pilG Neisseria gonorrhoeae MS11

41.542

98.289

0.408
  pilG Neisseria meningitidis 44/76-A

41.294

98.289

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399

Multiple sequence alignment