Detailed information NTG0092316

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCU90_RS14465
• Genome accession: NZ_AP025508
• Coordinates: 3279892..3280761 (+)
• Length: 289 a.a.
• NCBI ID: WP_061022520.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain LMG 19031
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3274892..3285761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU90_RS14445	nadC	3275313..3276203 (+)	891	WP_061022514.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OCU90_RS14450	-	3276459..3276893 (+)	435	WP_061022516.1	pilin	-
OCU90_RS14455	pilB	3276894..3278579 (+)	1686	WP_061022518.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCU90_RS14460	pilC	3278595..3279824 (+)	1230	WP_004735441.1	type II secretion system F family protein	Machinery gene
OCU90_RS14465	pilD	3279892..3280761 (+)	870	WP_061022520.1	A24 family peptidase	Machinery gene
OCU90_RS14470	coaE	3280764..3281378 (+)	615	WP_061022521.1	dephospho-CoA kinase	-
OCU90_RS14475	zapD	3281405..3282145 (+)	741	WP_017087400.1	cell division protein ZapD	-
OCU90_RS14480	yacG	3282227..3282424 (+)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
OCU90_RS14485	rplS	3282772..3283125 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
OCU90_RS14490	trmD	3283185..3283925 (-)	741	WP_004735512.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCU90_RS14495	rimM	3283952..3284506 (-)	555	WP_004735510.1	ribosome maturation factor RimM	-
OCU90_RS14500	rpsP	3284531..3284779 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32571.80 Da
• Isoelectric Point: 7.6347

>NTDB_id=92316 OCU90_RS14465 WP_061022520.1 3279892..3280761(+) (pilD) [Vibrio splendidus strain LMG 19031]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRVI
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=92316 OCU90_RS14465 WP_061022520.1 3279892..3280761(+) (pilD) [Vibrio splendidus strain LMG 19031]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATAATGATGGAACGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTCAATCTCAGTATCCCTCGTTCTACCTGTCCAAAATGCAAAACCCAATTAAGGGTAATC
GACAATATTCCTGTATTAAGCTGGTTGTTCTTAAAAGGCAAATGCCATAGCTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAATTGCTTACCGCAATCCTTTGTACCGTAGTCGCGAGCCACTTTGGCTTCAGTTACTACGCCATCGCTCTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGCTGCCAGATCAAATCACCTTACCT
TTAGTTTGGTCTGGTATCGCGTTAGCTCTGTTTAATATCAGCCCAGTATCGCTTCAAGATTCCGTAATTGGCGCAATGGC
AGGCTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGTATGGGTTACGGTGATTTCA
AGTTACTAGCTGCGCTTGGCGCCTGGCTTGGTTGGCAGCACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTA
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAGCAAGGCATAGATAAAGCCTTTCCCTTTGGACCTTACCTTGCGATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	69.792	99.654	0.696
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436