Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | OCU90_RS04675 | Genome accession | NZ_AP025508 |
| Coordinates | 1053808..1054107 (+) | Length | 99 a.a. |
| NCBI ID | WP_061024991.1 | Uniprot ID | A0AB35N522 |
| Organism | Vibrio splendidus strain LMG 19031 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1048808..1059107
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU90_RS04665 | - | 1051168..1051461 (+) | 294 | WP_012604504.1 | HU family DNA-binding protein | - |
| OCU90_RS04670 | ppiD | 1051682..1053547 (+) | 1866 | WP_061024989.1 | peptidylprolyl isomerase | - |
| OCU90_RS04675 | comEA | 1053808..1054107 (+) | 300 | WP_061024991.1 | ComEA family DNA-binding protein | Machinery gene |
| OCU90_RS04680 | rrtA | 1054098..1054646 (-) | 549 | WP_029222361.1 | rhombosortase | - |
| OCU90_RS04685 | - | 1054656..1055255 (+) | 600 | WP_061024992.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| OCU90_RS04690 | - | 1055282..1056625 (-) | 1344 | WP_017095902.1 | anti-phage deoxyguanosine triphosphatase | - |
| OCU90_RS04695 | yfbR | 1056680..1057264 (-) | 585 | WP_061024994.1 | 5'-deoxynucleotidase | - |
| OCU90_RS04700 | - | 1057609..1058841 (-) | 1233 | WP_004736094.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10796.21 Da Isoelectric Point: 4.2220
>NTDB_id=92303 OCU90_RS04675 WP_061024991.1 1053808..1054107(+) (comEA) [Vibrio splendidus strain LMG 19031]
MRTIYSTLLLSFLMALSSPAFSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTNVEDLV
SVKGIGEATVEKNRERIQL
MRTIYSTLLLSFLMALSSPAFSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTNVEDLV
SVKGIGEATVEKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=92303 OCU90_RS04675 WP_061024991.1 1053808..1054107(+) (comEA) [Vibrio splendidus strain LMG 19031]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGAATGTTGAGGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGAATGTTGAGGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
53.608 |
97.98 |
0.525 |
| comEA | Vibrio cholerae strain A1552 |
53.608 |
97.98 |
0.525 |
| comEA | Vibrio campbellii strain DS40M4 |
53.261 |
92.929 |
0.495 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
53.846 |
91.919 |
0.495 |
| comEA | Acinetobacter baylyi ADP1 |
51.22 |
82.828 |
0.424 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
37.838 |
100 |
0.424 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
65 |
60.606 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.275 |
100 |
0.374 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.275 |
100 |
0.374 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
43.902 |
82.828 |
0.364 |