Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VRB12_RS24385 Genome accession   NZ_CP142181
Coordinates   5374210..5375706 (+) Length   498 a.a.
NCBI ID   WP_003231583.1    Uniprot ID   A0AAP2S0I4
Organism   Pseudomonas poae strain P_poae_W12_7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5369210..5380706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB12_RS24355 (VRB12_24355) - 5369681..5370376 (+) 696 WP_003231574.1 HAD-IA family hydrolase -
  VRB12_RS24360 (VRB12_24360) sutA 5370581..5370913 (-) 333 WP_003231576.1 transcriptional regulator SutA -
  VRB12_RS24365 (VRB12_24365) - 5371015..5371440 (-) 426 WP_015373280.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VRB12_RS24370 (VRB12_24370) - 5371651..5372988 (-) 1338 WP_003231579.1 ammonium transporter -
  VRB12_RS24375 (VRB12_24375) glnK 5373023..5373361 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VRB12_RS24380 (VRB12_24380) - 5373785..5374045 (+) 261 WP_003231581.1 accessory factor UbiK family protein -
  VRB12_RS24385 (VRB12_24385) comM 5374210..5375706 (+) 1497 WP_003231583.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VRB12_RS24390 (VRB12_24390) - 5375841..5377817 (-) 1977 WP_236277453.1 methyl-accepting chemotaxis protein -
  VRB12_RS24395 (VRB12_24395) - 5378047..5379423 (+) 1377 WP_003231587.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53527.66 Da        Isoelectric Point: 7.9133

>NTDB_id=922754 VRB12_RS24385 WP_003231583.1 5374210..5375706(+) (comM) [Pseudomonas poae strain P_poae_W12_7]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGQVPIEPYKSDGLQYLNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPIQND
GETTTSASARVAQARERQQQRQGCANAFLDLPGLREHCTLAKVDESWLETACERLTLSLRAAHRLLKVARTLADLEQQDA
IARHHLQEALQYRPAALN

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=922754 VRB12_RS24385 WP_003231583.1 5374210..5375706(+) (comM) [Pseudomonas poae strain P_poae_W12_7]
ATGTCCCTCGCCATTGTCCACAGCCGCGCCCAGGTTGGCGTCGAAGCCCCCGCCGTCACCGTCGAGGTGCATATGGCCAA
TGGTTTGCCGTCCCTGACGCTGGTGGGTTTGCCCGAAACCGCCGTCAAGGAAAGCAAGGACCGTGTACGCAGTGCCATCC
TCAATTCGGCCCTGCAATACCCGTCGCGCCGGATCACCCTCAACCTTGCACCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCAATTGCCTTGGGCATTCTGGCAGCCAGTGTGCAGGTGCCGGCGTTGATGCTCGATGACGTGGAGTGCCT
CGGGGAATTGGCGTTGTCCGGCGAGGTGCGCGCCGTCAAGGGCGTGTTGCCGGCGGCGTTGGCCGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAACGCCGAGGAGGCGTGCCTGGCGTCGGGACTGAAGGTCATAGCGGTGGATCACCTG
CTGCAGGTGGTCGCACACCTGAATGGACAGGTGCCCATTGAGCCCTACAAGTCAGACGGTTTGCAGTACCTGAACAAGCC
GTATCCGGACCTGAGCGAGGTGCAGGGCCAGCTCTCGGCCAAGCGCGCCTTGCTGATCGCAGCGGCGGGCGCGCATAACC
TGCTGCTCAGCGGCCCGCCCGGCACTGGCAAGACCTTGCTCGCCAGTCGCCTGCCGGGCCTGCTACCGCCGCTGAGTGAG
CAGGAAGCGCTGGAAGTCGCGGCGATTCAATCGGTCGTCAGCCTCGCGCCCTTGAGCCACTGGCCCCATCGGCCGTTTCG
CCAGCCGCATCACTCCGCATCCGGCCCGGCACTGGTGGGCGGCGGGTCAAAACCGCAACCGGGGGAAATCACCCTGGCAC
ACCATGGCGTGCTGTTTCTGGATGAATTGCCCGAGTTTGATCGCAAGGTGCTTGAGGTACTGCGCGAACCCCTGGAGTCA
GGCCATATCGTGATTTCCCGCGCCCGCGACCGCGTGAGTTTCCCGGCGCGCTTTCAACTGGTGGCAGCAATGAACCCGTG
TCCCTGCGGGTATATGGGCGAGCCCAGTGGTCGTTGTCGCTGTACGCCGGAACAGATTCAGCGCTATCGCAACAAACTCT
CCGGGCCTCTGCTGGACCGGATCGATCTGCACCTGACCGTGGCACGAGAGACCACAGCGCTCAATCCCATTCAAAACGAT
GGTGAAACAACGACCAGCGCCTCGGCGCGCGTTGCCCAGGCGCGCGAGCGTCAACAGCAACGCCAGGGATGTGCCAATGC
CTTTCTTGACCTGCCGGGTTTGCGCGAGCATTGCACACTGGCAAAGGTCGACGAGAGCTGGCTGGAGACCGCATGCGAGC
GCTTGACGCTGTCGCTGCGTGCGGCGCATCGGCTGCTAAAGGTGGCGCGCACGTTGGCAGACCTGGAGCAACAAGACGCG
ATCGCGCGTCACCACCTGCAAGAGGCACTGCAATACCGCCCGGCGGCACTTAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Vibrio cholerae strain A1552

55.847

99.598

0.556
  comM Glaesserella parasuis strain SC1401

55.289

100

0.556
  comM Haemophilus influenzae Rd KW20

54.6

100

0.548
  comM Legionella pneumophila str. Paris

51.406

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.406

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.474