Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   vsple_RS14025 Genome accession   NZ_AP025503
Coordinates   3133637..3134749 (-) Length   370 a.a.
NCBI ID   WP_261882286.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3128637..3139749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS13995 hemF 3129218..3130135 (-) 918 WP_150870660.1 oxygen-dependent coproporphyrinogen oxidase -
  vsple_RS14000 - 3130157..3130714 (-) 558 WP_261882283.1 L-threonylcarbamoyladenylate synthase -
  vsple_RS14005 purE 3130912..3131397 (+) 486 WP_032548673.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  vsple_RS14010 - 3131403..3132533 (+) 1131 WP_261882284.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  vsple_RS14015 - 3132576..3133145 (-) 570 WP_261882285.1 type I DNA topoisomerase -
  vsple_RS14020 - 3133158..3133634 (-) 477 WP_032548670.1 DUF494 family protein -
  vsple_RS14025 dprA 3133637..3134749 (-) 1113 WP_261882286.1 DNA-processing protein DprA Machinery gene
  vsple_RS14030 - 3134759..3135853 (-) 1095 WP_261882287.1 LysM peptidoglycan-binding domain-containing protein -
  vsple_RS14035 def 3135994..3136509 (+) 516 WP_255229577.1 peptide deformylase -
  vsple_RS14040 fmt 3136544..3137491 (+) 948 WP_261882288.1 methionyl-tRNA formyltransferase -
  vsple_RS14045 rsmB 3137580..3138860 (+) 1281 WP_261882289.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40266.09 Da        Isoelectric Point: 6.8837

>NTDB_id=92245 vsple_RS14025 WP_261882286.1 3133637..3134749(-) (dprA) [Vibrio pelagius strain ATCC 25916]
MTDQELTAWLRLSFVPKLGMKRLKRLLAIDSPFNIINYPHEQLQSLGFSDSQITYLRFKTEPLVEECLSWQAKSANHHLV
THQCAAYPPSLRQISSAPSTLFVRGNIATLSDPQIAMVGSRNASLEGLQTAKAFAREFAQSGLIVTSGLALGIDGYAHDG
ALEGGGETFAVLGSGLDAIYPARHRKLAQRIEEQGALISEFRPSAKPRPENFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYALEQGREVFALPGSIHNPTSRGGNSLIKSGACLVQSAQDVLVEIKSLLDWSIEVQPSLFEAPITDNENEQLPFPHLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92245 vsple_RS14025 WP_261882286.1 3133637..3134749(-) (dprA) [Vibrio pelagius strain ATCC 25916]
ATGACTGATCAAGAGTTGACGGCGTGGTTGAGGCTGAGCTTCGTTCCTAAGCTAGGAATGAAGCGCCTTAAACGCTTACT
GGCTATCGACTCGCCATTTAATATCATTAACTACCCACATGAGCAGCTTCAGTCGCTAGGTTTCTCCGATTCTCAAATTA
CCTATCTTAGATTCAAAACAGAGCCATTGGTTGAAGAGTGCTTATCGTGGCAAGCGAAAAGTGCCAACCATCATCTTGTT
ACTCACCAATGTGCCGCATATCCACCAAGCCTGCGCCAGATATCTAGCGCACCTAGTACACTGTTTGTGCGCGGTAATAT
CGCTACCCTTAGTGATCCTCAAATCGCGATGGTGGGTAGTCGTAATGCCAGCCTAGAAGGACTGCAAACGGCCAAAGCAT
TTGCTCGAGAGTTTGCGCAGAGCGGTTTGATTGTGACTAGTGGCTTAGCGTTGGGTATTGATGGCTATGCTCATGATGGT
GCTCTAGAAGGCGGCGGTGAAACTTTTGCAGTGCTAGGTTCGGGGTTAGATGCTATCTACCCAGCACGCCATCGTAAATT
GGCACAGCGGATCGAAGAGCAGGGCGCGCTAATCTCTGAATTTCGCCCTTCGGCTAAACCTCGTCCTGAAAACTTTCCGC
GTCGCAATCGTATTATCAGTGGCTTGTCGCTCGGTACACTGGTGGTCGAAGCGGCGGAAAAGAGTGGTTCATTGATTACG
GCTCGCTACGCATTAGAACAAGGGCGAGAAGTCTTTGCTTTGCCTGGTTCAATACATAATCCGACTAGCCGTGGAGGAAA
CAGTTTAATTAAGTCGGGCGCTTGCTTGGTTCAGAGTGCTCAAGATGTGCTTGTTGAAATAAAAAGTCTATTGGATTGGT
CTATTGAAGTACAACCCAGTCTGTTTGAAGCGCCGATAACCGACAATGAAAATGAACAATTGCCATTTCCGCATCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGCGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTCTTAGAGTTAGAACTTTTAGGGCATGTTGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-363)

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.583

99.73

0.654
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.481
  dprA Haemophilus influenzae Rd KW20

46.269

90.541

0.419
  dprA Neisseria meningitidis strain C311

38.035

100

0.408
  dprA Neisseria meningitidis MC58

38.035

100

0.408
  dprA Legionella pneumophila strain ERS1305867

48.701

83.243

0.405
  dprA Neisseria gonorrhoeae MS11

37.468

100

0.4
  dprA Neisseria gonorrhoeae strain FA1090

37.468

100

0.4

Multiple sequence alignment