Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV24_RS14095 Genome accession   NZ_AP025497
Coordinates   3125028..3126140 (-) Length   370 a.a.
NCBI ID   WP_150879248.1    Uniprot ID   -
Organism   Vibrio kanaloae strain LMG 20539     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3120028..3131140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS14065 hemF 3120550..3121467 (-) 918 WP_136981228.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV24_RS14070 - 3121487..3122044 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  OCV24_RS14075 purE 3122240..3122725 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV24_RS14080 - 3122731..3123861 (+) 1131 WP_150879249.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV24_RS14085 - 3123966..3124535 (-) 570 WP_146443526.1 type I DNA topoisomerase -
  OCV24_RS14090 - 3124548..3125024 (-) 477 WP_077681026.1 DUF494 family protein -
  OCV24_RS14095 dprA 3125028..3126140 (-) 1113 WP_150879248.1 DNA-processing protein DprA Machinery gene
  OCV24_RS14100 - 3126137..3127243 (-) 1107 WP_150879247.1 LysM peptidoglycan-binding domain-containing protein -
  OCV24_RS14105 def 3127384..3127896 (+) 513 WP_004735769.1 peptide deformylase -
  OCV24_RS14110 fmt 3127934..3128881 (+) 948 WP_150879245.1 methionyl-tRNA formyltransferase -
  OCV24_RS14115 rsmB 3129001..3130281 (+) 1281 WP_150879250.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40125.83 Da        Isoelectric Point: 6.8796

>NTDB_id=92160 OCV24_RS14095 WP_150879248.1 3125028..3126140(-) (dprA) [Vibrio kanaloae strain LMG 20539]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQTSYLREQAPREVEACLVWQARQPNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLGSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKTGACLVQSAQDVLIEIKSLLDWSIEQQPSLFELTPNEDENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92160 OCV24_RS14095 WP_150879248.1 3125028..3126140(-) (dprA) [Vibrio kanaloae strain LMG 20539]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTGAGTTTTGTTCCGCAACTGGGAGGCAAGCGCCTTTCTCGCCTGCT
GAGTATTGACTCTCCTTCCAATATTGTTGGTTACTCCAGCCAGCAGCTACAAGCTATTGGGTTGTCAGCTAAGCAAACCT
CCTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGTATGGCAAGCAAGGCAGCCTAATCATCACATCATT
ACCCCAAATTGCCCTCATTACCCTAAACTGCTGAATGAGACCGCCTCTGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTATCGAAGGGCTGCAAACCGCGAAGTCTT
TCGCCAAAGAGTTCGTTCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTGTTGGGATCAGGCTTGGGCTCCATTTACCCTGCACGTCACCGAAATCT
AGCGGATAGAATTTGTGAGAATGGCGCGCTGATCTCAGAATTCCGCCCAAGCGCTAAACCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTCGTTGTTGAGGCTGCTGAGAAAAGCGGTTCTTTGATTACA
GCTCGCTATGCTATGGAGCAAGGCCGAGAAGTGTTTGCGCTTCCTGGCTCAATTCATAGCCCAACCAGCCGCGGAGGCAA
TAGCTTAATCAAAACTGGCGCATGTTTGGTACAGAGCGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGAGCAGCAGCCCAGCTTATTCGAACTTACGCCGAATGAGGATGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAAGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

59.03

100

0.592
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.47
  dprA Haemophilus influenzae Rd KW20

45.104

91.081

0.411
  dprA Legionella pneumophila strain ERS1305867

46.037

88.649

0.408
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Acinetobacter baylyi ADP1

39.645

91.351

0.362

Multiple sequence alignment