Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M3O59_RS15485 Genome accession   NZ_CP142084
Coordinates   3564990..3566243 (+) Length   417 a.a.
NCBI ID   WP_116906314.1    Uniprot ID   A0A3E1KGS9
Organism   Xanthomonas nasturtii strain 10053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3559990..3571243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O59_RS15465 (M3O59_015440) pilR 3560197..3561591 (+) 1395 WP_147308524.1 sigma-54 dependent transcriptional regulator Regulator
  M3O59_RS15470 (M3O59_015445) pilB 3561721..3563451 (-) 1731 WP_116906311.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M3O59_RS15475 (M3O59_015450) - 3563497..3563937 (-) 441 WP_116906312.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M3O59_RS15480 (M3O59_015455) - 3564164..3564622 (-) 459 WP_116906313.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M3O59_RS15485 (M3O59_015460) pilC 3564990..3566243 (+) 1254 WP_116906314.1 type II secretion system F family protein Machinery gene
  M3O59_RS15490 (M3O59_015465) - 3566250..3567113 (+) 864 WP_046343941.1 A24 family peptidase -
  M3O59_RS15495 (M3O59_015470) coaE 3567127..3567732 (+) 606 WP_116906315.1 dephospho-CoA kinase -
  M3O59_RS15500 (M3O59_015475) - 3567804..3569138 (-) 1335 WP_181920605.1 HAMP domain-containing sensor histidine kinase -
  M3O59_RS15505 (M3O59_015480) - 3569131..3569808 (-) 678 WP_006448355.1 response regulator transcription factor -
  M3O59_RS15510 (M3O59_015485) - 3569834..3570309 (-) 476 Protein_3022 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45545.67 Da        Isoelectric Point: 10.1946

>NTDB_id=921397 M3O59_RS15485 WP_116906314.1 3564990..3566243(+) (pilC) [Xanthomonas nasturtii strain 10053]
MSAVRSNLKNTPKSVTTQLPTFTWEGVDRRGVKMKGEQTARNANLLKAELRRQGITPSAVKPKAKPLFGAAGKKITPKDI
AFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMRDLVGQLRADIEGGSSLYESLSKHPVQFDELYRNLVKAGEGAGVLET
VLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAVLLIFVVPQFEDVFKGFGAELPAFTQLIVSASRFMVSYWWLI
SFIVIGSAAAFLFTFKRSLRLQHFMDRLVLKIPIIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNAVYEEA
VFRMRDDVSVGYPVNTAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPLIMVFIGTVVG
GMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=921397 M3O59_RS15485 WP_116906314.1 3564990..3566243(+) (pilC) [Xanthomonas nasturtii strain 10053]
ATGTCAGCAGTACGCAGCAATCTTAAGAACACTCCGAAGAGCGTGACCACTCAACTCCCCACGTTCACGTGGGAAGGCGT
GGATCGCCGCGGCGTGAAGATGAAAGGTGAGCAGACTGCTCGCAATGCAAACCTATTAAAGGCAGAGCTAAGGCGACAGG
GCATCACTCCTAGCGCAGTAAAGCCGAAGGCGAAACCACTGTTTGGCGCAGCCGGAAAAAAAATAACACCTAAGGATATC
GCTTTCTTTAGCAGGCAAATGGCAACGATGATGAAGTCCGGGGTGCCTATTGTTAGTGCACTTGAGATTATCGGTAGTGG
ACATAAAAACCCTCGCATGAGAGATTTGGTTGGCCAACTACGAGCTGATATCGAAGGCGGCTCATCACTCTATGAATCGC
TAAGCAAGCACCCCGTCCAGTTCGACGAGCTATACAGAAATCTCGTTAAGGCAGGTGAGGGTGCGGGCGTGCTTGAAACT
GTTCTTGAAACAGTTGCGACGTATAAAGAAAACATCGAAGCACTCAAGGGAAAGATAAAGAAAGCGCTCTTTTATCCAGC
GATGGTTGTTGCAGTAGCAATCATTGTCAGCGCCGTCCTACTCATTTTTGTGGTCCCACAATTTGAAGATGTATTTAAGG
GGTTTGGCGCTGAACTTCCAGCTTTCACGCAGCTTATCGTTTCCGCTTCACGCTTCATGGTCTCTTATTGGTGGCTGATA
TCATTCATCGTCATTGGCTCCGCAGCAGCATTCCTATTCACTTTCAAACGTTCCTTGCGGCTGCAGCACTTCATGGACCG
CCTCGTACTCAAAATTCCGATTATTGGGCAGATTATGCATAACAGCGCAATCGCCCGTTTCTCTAGAACCACAGCTGTCA
CATTTAAGGCCGGCGTCCCACTTGTTGAGGCATTAGGAATTGTGGCGGGCGCGACCGGTAACGCGGTATATGAAGAAGCT
GTTTTCAGGATGCGAGACGATGTCTCTGTGGGATACCCGGTAAATACCGCCATGAAGCAAGTCAACCTCTTCCCTCACAT
GGTAATTCAGATGACAGCCATTGGCGAAGAGGCTGGCGCCCTCGACGCAATGCTATTCAAAGTGGCAGAATATTACGAGC
AAGAAGTGAATAATGCGGTGGATGCTTTGAGTAGTCTGCTTGAGCCACTCATCATGGTTTTCATTGGCACGGTTGTGGGA
GGGATGGTAATTGGCATGTATCTTCCCATCTTCAAACTAGCTTCGGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1KGS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.301

98.082

0.523
  pilC Acinetobacter baylyi ADP1

53.598

96.643

0.518
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.964

0.516
  pilC Acinetobacter baumannii D1279779

52.25

95.923

0.501
  pilG Neisseria gonorrhoeae MS11

44.638

96.163

0.429
  pilG Neisseria meningitidis 44/76-A

44.14

96.163

0.424
  pilC Vibrio cholerae strain A1552

41.294

96.403

0.398
  pilC Vibrio campbellii strain DS40M4

40.049

97.602

0.391