Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M3O59_RS15465 Genome accession   NZ_CP142084
Coordinates   3560197..3561591 (+) Length   464 a.a.
NCBI ID   WP_147308524.1    Uniprot ID   -
Organism   Xanthomonas nasturtii strain 10053     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3555197..3566591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O59_RS15445 (M3O59_015420) - 3555461..3556033 (-) 573 WP_373418978.1 hypothetical protein -
  M3O59_RS15450 (M3O59_015425) sucD 3556102..3556977 (-) 876 WP_064634550.1 succinate--CoA ligase subunit alpha -
  M3O59_RS15455 (M3O59_015430) sucC 3557002..3558171 (-) 1170 WP_064634549.1 ADP-forming succinate--CoA ligase subunit beta -
  M3O59_RS15460 (M3O59_015435) - 3558404..3560017 (+) 1614 WP_064634548.1 PAS domain-containing sensor histidine kinase -
  M3O59_RS15465 (M3O59_015440) pilR 3560197..3561591 (+) 1395 WP_147308524.1 sigma-54 dependent transcriptional regulator Regulator
  M3O59_RS15470 (M3O59_015445) pilB 3561721..3563451 (-) 1731 WP_116906311.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M3O59_RS15475 (M3O59_015450) - 3563497..3563937 (-) 441 WP_116906312.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M3O59_RS15480 (M3O59_015455) - 3564164..3564622 (-) 459 WP_116906313.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M3O59_RS15485 (M3O59_015460) pilC 3564990..3566243 (+) 1254 WP_116906314.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50155.53 Da        Isoelectric Point: 6.4497

>NTDB_id=921395 M3O59_RS15465 WP_147308524.1 3560197..3561591(+) (pilR) [Xanthomonas nasturtii strain 10053]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=921395 M3O59_RS15465 WP_147308524.1 3560197..3561591(+) (pilR) [Xanthomonas nasturtii strain 10053]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGACGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTGTGCCTGA
CCGACATGCGTTTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATTGCGAAGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGACCTGGCCGTGGAAGCCTTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGTGGGCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGCCCCGCCCCGCCACCACCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTTGCGCGT
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTCCCGGTCAACTGCGGTGCCATCCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTTCAAGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAATCGCTGGTCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCACGACTTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCGCTCGA
CGCGCTGGATCACTACGGCTTCCCCGGCAACGTCCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCTGCCACACCCGGCAGCGCCGCC
GTGGAACCGCGCGAAGCCGTCGTCGATATCGACCCCGCTTCGGCCGCCCTGCCCTCTTATATCGAACAACTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTGGGCATCACGTTTCGTGCGC
TGCGGTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489