Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DGAOKPDK_RS14035 Genome accession   NZ_CP142019
Coordinates   2981523..2982749 (+) Length   408 a.a.
NCBI ID   WP_000279216.1    Uniprot ID   A0A009IRK3
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2976523..2987749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS14000 (VOI31_RS13995) rimP 2977188..2977712 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  DGAOKPDK_RS14020 (VOI31_RS14015) secG 2978354..2978683 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  DGAOKPDK_RS14025 (VOI31_RS14020) tpiA 2978696..2979490 (-) 795 WP_032050671.1 triose-phosphate isomerase -
  DGAOKPDK_RS14030 (VOI31_RS14025) pilB 2979781..2981493 (+) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGAOKPDK_RS14035 (VOI31_RS14030) pilC 2981523..2982749 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  DGAOKPDK_RS14040 (VOI31_RS14035) pilD 2982749..2983609 (+) 861 WP_114253144.1 prepilin peptidase Machinery gene
  DGAOKPDK_RS14045 (VOI31_RS14040) coaE 2983611..2984207 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  DGAOKPDK_RS14050 (VOI31_RS14045) - 2984204..2985118 (-) 915 WP_000075015.1 DMT family transporter -
  DGAOKPDK_RS14055 (VOI31_RS14050) rlmB 2985154..2985903 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DGAOKPDK_RS14060 (VOI31_RS14055) - 2986005..2986331 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  DGAOKPDK_RS14065 (VOI31_RS14060) - 2986408..2987718 (-) 1311 WP_000753287.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44936.43 Da        Isoelectric Point: 9.9566

>NTDB_id=921066 DGAOKPDK_RS14035 WP_000279216.1 2981523..2982749(+) (pilC) [Acinetobacter baumannii strain EMB-1]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=921066 DGAOKPDK_RS14035 WP_000279216.1 2981523..2982749(+) (pilC) [Acinetobacter baumannii strain EMB-1]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCTATGCGAGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTGGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IRK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.755

100

0.998
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36