Detailed information NTG0921067

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DGAOKPDK_RS14040
• Genome accession: NZ_CP142019
• Coordinates: 2982749..2983609 (+)
• Length: 286 a.a.
• NCBI ID: WP_114253144.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain EMB-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2977749..2988609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGAOKPDK_RS14020 (VOI31_RS14015)	secG	2978354..2978683 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
DGAOKPDK_RS14025 (VOI31_RS14020)	tpiA	2978696..2979490 (-)	795	WP_032050671.1	triose-phosphate isomerase	-
DGAOKPDK_RS14030 (VOI31_RS14025)	pilB	2979781..2981493 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DGAOKPDK_RS14035 (VOI31_RS14030)	pilC	2981523..2982749 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
DGAOKPDK_RS14040 (VOI31_RS14035)	pilD	2982749..2983609 (+)	861	WP_114253144.1	prepilin peptidase	Machinery gene
DGAOKPDK_RS14045 (VOI31_RS14040)	coaE	2983611..2984207 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
DGAOKPDK_RS14050 (VOI31_RS14045)	-	2984204..2985118 (-)	915	WP_000075015.1	DMT family transporter	-
DGAOKPDK_RS14055 (VOI31_RS14050)	rlmB	2985154..2985903 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DGAOKPDK_RS14060 (VOI31_RS14055)	-	2986005..2986331 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
DGAOKPDK_RS14065 (VOI31_RS14060)	-	2986408..2987718 (-)	1311	WP_000753287.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32112.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=921067 DGAOKPDK_RS14040 WP_114253144.1 2982749..2983609(+) (pilD) [Acinetobacter baumannii strain EMB-1]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=921067 DGAOKPDK_RS14040 WP_114253144.1 2982749..2983609(+) (pilD) [Acinetobacter baumannii strain EMB-1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.951	100	0.99
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441