Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCU78_RS11770 Genome accession   NZ_AP025490
Coordinates   2731863..2733089 (+) Length   408 a.a.
NCBI ID   WP_137373380.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2726863..2738089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS11750 ampD 2727790..2728347 (-) 558 WP_137373384.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OCU78_RS11755 nadC 2728482..2729372 (+) 891 WP_137373383.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCU78_RS11760 - 2729623..2730078 (+) 456 WP_137373382.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCU78_RS11765 pilB 2730080..2731765 (+) 1686 WP_137373381.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU78_RS11770 pilC 2731863..2733089 (+) 1227 WP_137373380.1 type II secretion system F family protein Machinery gene
  OCU78_RS11775 pilD 2733158..2734027 (+) 870 WP_137373379.1 A24 family peptidase Machinery gene
  OCU78_RS11780 coaE 2734030..2734644 (+) 615 WP_137373378.1 dephospho-CoA kinase -
  OCU78_RS11785 zapD 2734671..2735411 (+) 741 WP_137373377.1 cell division protein ZapD -
  OCU78_RS11790 yacG 2735474..2735671 (+) 198 WP_137373376.1 DNA gyrase inhibitor YacG -
  OCU78_RS11795 - 2735935..2737938 (+) 2004 WP_137373375.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45113.09 Da        Isoelectric Point: 10.2225

>NTDB_id=92057 OCU78_RS11770 WP_137373380.1 2731863..2733089(+) (pilC) [Vibrio gallaecicus strain CECT 7244]
MNKTSQPQLKNYRWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKSSVSALTRITNRVTPKDITVLTRQLATM
LTTGVPIVQAIKLVSDNHRKAEMKSILSHISKGVEAGTPISKSMRTASRHFDDLYTDLVATGELSGTLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVVLVALAVSYLMLTMVIPEFESMFAGFGAELPWFTQQVLHLSHWMQAYSFYAAVGIIVSIIS
FKLVRKRSYSIRLATSRLGLKFPILGGVISKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEVAIGEVHRETAA
GMPMYIAMRNTDVFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=92057 OCU78_RS11770 WP_137373380.1 2731863..2733089(+) (pilC) [Vibrio gallaecicus strain CECT 7244]
ATGAATAAAACAAGCCAGCCACAATTAAAAAATTATCGTTGGAAAGGAATCAATAGCTCCGGTAAAAAAGTGTCAGGACA
AACTTTAGCGCTTACAGAGTTAGAAGTAAGAGAAAAGCTTAAAGAACAGCATATACAAATTAAGAAAATAAAAAAAAGCA
GTGTTTCCGCTTTAACTAGAATAACCAACCGAGTGACACCAAAAGACATTACCGTATTAACTAGGCAGCTAGCCACCATG
CTTACAACAGGTGTACCAATTGTTCAGGCAATTAAGTTGGTTTCAGACAATCATCGTAAAGCTGAAATGAAATCGATTCT
TTCACATATAAGTAAAGGAGTGGAAGCGGGCACCCCAATATCTAAATCCATGCGAACCGCAAGCCGCCATTTTGATGACC
TATACACAGATTTAGTCGCTACCGGTGAGTTATCAGGGACATTGGCTGAAGTCTTTGAGCGGCTAGCTACTTATCGTGAA
AAAAGCGAGCAATTGAGAGCTAAAGTCATTAAAGCGCTAATCTACCCAGCGATGGTCGTGCTAGTAGCATTAGCAGTTTC
TTACTTAATGCTCACTATGGTTATTCCTGAATTCGAGTCAATGTTTGCAGGATTTGGGGCTGAGTTGCCCTGGTTCACTC
AACAAGTTCTACATTTGTCTCACTGGATGCAAGCCTATAGTTTTTACGCTGCGGTCGGTATCATCGTCTCTATTATCAGC
TTTAAACTTGTCCGAAAACGATCCTACTCAATTCGCTTGGCGACCAGCAGACTTGGTTTGAAATTTCCAATCTTGGGCGG
TGTTATATCAAAAGCCTCCATAGCAAAATTTAGCCGAACTCTTTCCACCAGCTTCAGCTCTGGTATTCCAATTTTAACCA
GCTTGAAAACCACCGCAAAAACGGCAGGTAACCTACATTATGAAGTCGCAATTGGCGAGGTTCATCGAGAAACAGCAGCT
GGTATGCCAATGTATATTGCAATGCGTAATACCGATGTTTTCCCTGAAATGGTGTTGCAAATGGTGATGATCGGAGAGGA
GTCTGGAAACCTAGACGACATGCTCAATAAAGTCGCTACTATCTATGAATTTGAAGTGGATAATACCGTAGATAATTTAG
GTAAAATTCTAGAACCTTTAATCATCGTTTTCCTTGGTACGGTAGTTGGGGGGCTTGTAGTTGCCATGTACTTACCAATA
TTTAATCTTATGAGTGTGTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.127

100

0.811
  pilC Vibrio campbellii strain DS40M4

74.138

99.51

0.738
  pilC Legionella pneumophila strain ERS1305867

42.506

99.755

0.424
  pilC Acinetobacter baumannii D1279779

42

98.039

0.412
  pilC Pseudomonas stutzeri DSM 10701

41.235

99.265

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

41.058

97.304

0.4

Multiple sequence alignment