Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OCU78_RS11775 Genome accession   NZ_AP025490
Coordinates   2733158..2734027 (+) Length   289 a.a.
NCBI ID   WP_137373379.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2728158..2739027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS11755 nadC 2728482..2729372 (+) 891 WP_137373383.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCU78_RS11760 - 2729623..2730078 (+) 456 WP_137373382.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCU78_RS11765 pilB 2730080..2731765 (+) 1686 WP_137373381.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU78_RS11770 pilC 2731863..2733089 (+) 1227 WP_137373380.1 type II secretion system F family protein Machinery gene
  OCU78_RS11775 pilD 2733158..2734027 (+) 870 WP_137373379.1 A24 family peptidase Machinery gene
  OCU78_RS11780 coaE 2734030..2734644 (+) 615 WP_137373378.1 dephospho-CoA kinase -
  OCU78_RS11785 zapD 2734671..2735411 (+) 741 WP_137373377.1 cell division protein ZapD -
  OCU78_RS11790 yacG 2735474..2735671 (+) 198 WP_137373376.1 DNA gyrase inhibitor YacG -
  OCU78_RS11795 - 2735935..2737938 (+) 2004 WP_137373375.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  OCU78_RS11800 rplS 2738102..2738455 (-) 354 WP_137373374.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32444.58 Da        Isoelectric Point: 6.3144

>NTDB_id=92058 OCU78_RS11775 WP_137373379.1 2733158..2734027(+) (pilD) [Vibrio gallaecicus strain CECT 7244]
MEVFDYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWKQECSECFPEHNIPLPEGTFNLSVPRSTCPKCSTQLRLI
DNIPVLSWLLLRGKCHSCSNPISVRYPLVELLTATSCLVVASHFSFSYYAVALLFFTFVLIVATFIDLDTMLLPDQLTLP
LMWSGIALALFGISPVSLQDSVIGAMAGYLCLWSVYWAFKLLTGKDGMGFGDFKLLAALGAWLGWQHLPLIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLIWGNDIMNWYFTSVLGI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=92058 OCU78_RS11775 WP_137373379.1 2733158..2734027(+) (pilD) [Vibrio gallaecicus strain CECT 7244]
ATGGAAGTATTTGATTACTATCCTTGGCTATTTCCTGTATTAGCTTTTATTTTTAGCCTGCTCATTGGCAGCTTCCTAAA
TGTCGTGATCCATCGTTTACCTATAATGATGGAGAGGGAGTGGAAGCAAGAATGTTCAGAATGTTTTCCTGAACACAATA
TCCCATTGCCGGAAGGCACCTTTAATTTAAGTGTTCCTCGGTCAACATGCCCAAAATGTTCAACACAACTTAGGCTCATT
GATAATATCCCAGTCCTTAGCTGGTTATTATTAAGAGGAAAGTGTCATAGCTGCTCCAATCCCATAAGTGTTCGTTACCC
TTTAGTTGAATTGCTCACCGCAACGTCGTGTTTAGTCGTTGCAAGCCATTTTAGTTTCAGCTACTACGCCGTTGCACTGT
TATTTTTTACTTTTGTCCTTATTGTCGCCACGTTTATCGACCTAGATACAATGCTACTTCCTGATCAACTGACATTACCT
CTGATGTGGTCTGGTATCGCTCTTGCTCTATTCGGTATAAGCCCTGTTTCTTTACAAGACTCTGTCATCGGTGCAATGGC
TGGTTACTTGTGCCTTTGGAGTGTCTATTGGGCATTTAAGCTATTGACCGGTAAAGATGGTATGGGCTTCGGTGATTTTA
AATTACTCGCGGCGCTCGGAGCCTGGTTAGGTTGGCAACATTTACCTCTAATAATCTTACTTTCATCACTTGTAGGGCTA
GTATTTGGTCTAATACAATTGCGATTAAAACAACAAGGTATCGACAAAGCCTTTCCATTTGGTCCTTATCTTGCTATTGC
TGGCTGGGTGAGTCTCATTTGGGGTAATGATATTATGAATTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

76.471

100

0.765
  pilD Vibrio cholerae strain A1552

70.486

99.654

0.702
  pilD Acinetobacter baumannii D1279779

51.321

91.696

0.471
  pilD Acinetobacter nosocomialis M2

51.321

91.696

0.471
  pilD Neisseria gonorrhoeae MS11

48.375

95.848

0.464

Multiple sequence alignment