Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV50_RS14355 Genome accession   NZ_AP025487
Coordinates   3213312..3214424 (-) Length   370 a.a.
NCBI ID   WP_261903344.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3208312..3219424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS14325 hemF 3208890..3209807 (-) 918 WP_261903340.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV50_RS14330 - 3209829..3210386 (-) 558 WP_261903341.1 L-threonylcarbamoyladenylate synthase -
  OCV50_RS14335 purE 3210585..3211070 (+) 486 WP_004739348.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV50_RS14340 - 3211076..3212206 (+) 1131 WP_261903342.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV50_RS14345 - 3212248..3212820 (-) 573 WP_261903343.1 type I DNA topoisomerase -
  OCV50_RS14350 - 3212833..3213309 (-) 477 WP_275665802.1 DUF494 family protein -
  OCV50_RS14355 dprA 3213312..3214424 (-) 1113 WP_261903344.1 DNA-processing protein DprA Machinery gene
  OCV50_RS14360 - 3214434..3215510 (-) 1077 WP_261903345.1 LysM peptidoglycan-binding domain-containing protein -
  OCV50_RS14365 def 3215651..3216166 (+) 516 WP_032548665.1 peptide deformylase -
  OCV50_RS14370 fmt 3216200..3217147 (+) 948 WP_261903346.1 methionyl-tRNA formyltransferase -
  OCV50_RS14375 rsmB 3217236..3218516 (+) 1281 WP_261903347.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39953.78 Da        Isoelectric Point: 7.0589

>NTDB_id=92026 OCV50_RS14355 WP_261903344.1 3213312..3214424(-) (dprA) [Vibrio fortis strain LMG 21557]
MTEQELAAWLRLSFVPKLGMKRLKRLLAIDSPQNLVDYTHEQLSALGFSDSQITYLKFKTEPLIEECLAWQAQDSTHHIV
THQCAAYPPCLRQIASAPSALFVRGNIKTLSDPQIAMVGSRNASLEGLQTAKAFAREFAQSGLIVTSGLALGIDGYAHDG
ALSGGGETFAVLGSGLNAVYPARHRKLAERVAEQGALISEFRPSAKPRPENFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYALEQGREVFALPGSIHSPTSRGGNSLIKSGACLVQSAQDVLVEIKSLLDWSIEVQPSLFDAPTTDNANEQLPFPHLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92026 OCV50_RS14355 WP_261903344.1 3213312..3214424(-) (dprA) [Vibrio fortis strain LMG 21557]
ATGACAGAGCAAGAGCTAGCGGCGTGGTTGAGGTTAAGTTTTGTCCCTAAGTTGGGTATGAAGCGTCTTAAGCGCTTGCT
GGCTATCGATTCACCTCAAAATCTTGTTGATTACACCCACGAACAGCTGTCGGCTCTTGGTTTTTCAGATTCGCAAATAA
CCTACCTCAAATTCAAAACTGAGCCTCTAATTGAAGAGTGCTTAGCATGGCAAGCACAAGATTCGACACATCATATCGTT
ACTCACCAATGTGCAGCGTATCCACCTTGCTTGCGACAGATAGCCAGTGCGCCGAGCGCCTTATTTGTGCGCGGCAATAT
TAAAACACTGAGTGACCCTCAGATCGCGATGGTCGGCAGTCGCAATGCGAGCTTGGAAGGCTTGCAAACAGCCAAAGCCT
TCGCTCGAGAATTCGCCCAGAGTGGTTTGATTGTTACTAGTGGCCTGGCGCTCGGTATTGATGGTTATGCCCATGATGGA
GCCTTGTCGGGTGGAGGAGAAACCTTTGCTGTATTAGGCTCTGGGTTGAATGCGGTTTATCCGGCTCGTCATCGTAAACT
CGCGGAACGAGTCGCAGAACAAGGGGCGTTAATCTCTGAGTTTCGCCCTTCTGCTAAGCCGCGTCCTGAAAACTTCCCGC
GTCGTAATCGCATTATTAGTGGCTTGTCGCTAGGTACATTGGTGGTTGAAGCGGCGGAAAAGAGCGGTTCCTTGATTACG
GCTCGCTACGCATTAGAACAAGGGCGTGAAGTCTTTGCTTTGCCAGGTTCAATACACAGCCCTACCAGTCGTGGAGGAAA
CAGTTTAATCAAGTCGGGCGCTTGCCTAGTGCAGAGTGCTCAAGATGTCCTTGTTGAAATAAAAAGCCTATTAGATTGGT
CTATTGAAGTACAACCCAGTCTGTTTGATGCGCCAACAACTGACAATGCAAATGAACAATTGCCATTTCCACATCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGCGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTCTTAGAGTTAGAACTTTTAGGGCATGTTGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.684

100

0.662
  dprA Vibrio cholerae strain A1552

59.091

100

0.597
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.484
  dprA Haemophilus influenzae Rd KW20

44.776

90.541

0.405
  dprA Neisseria meningitidis strain C311

37.531

100

0.403
  dprA Neisseria meningitidis MC58

37.531

100

0.403
  dprA Legionella pneumophila strain ERS1305867

47.697

82.162

0.392
  dprA Neisseria gonorrhoeae MS11

36.456

100

0.389
  dprA Neisseria gonorrhoeae strain FA1090

36.456

100

0.389
  dprA Acinetobacter baylyi ADP1

39.535

92.973

0.368

Multiple sequence alignment