Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV36_RS16120 Genome accession   NZ_AP025483
Coordinates   3551762..3552874 (-) Length   370 a.a.
NCBI ID   WP_135458784.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3546762..3557874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS16090 hemF 3547302..3548219 (-) 918 WP_135458778.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV36_RS16095 - 3548239..3548796 (-) 558 WP_029224901.1 L-threonylcarbamoyladenylate synthase -
  OCV36_RS16100 purE 3548992..3549477 (+) 486 WP_017073863.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV36_RS16105 - 3549483..3550613 (+) 1131 WP_135458780.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV36_RS16110 - 3550700..3551269 (-) 570 WP_135458782.1 type I DNA topoisomerase -
  OCV36_RS16115 - 3551282..3551758 (-) 477 WP_017073860.1 DUF494 family protein -
  OCV36_RS16120 dprA 3551762..3552874 (-) 1113 WP_135458784.1 DNA-processing protein DprA Machinery gene
  OCV36_RS16125 - 3552871..3553962 (-) 1092 WP_135458786.1 LysM peptidoglycan-binding domain-containing protein -
  OCV36_RS16130 def 3554103..3554615 (+) 513 WP_029224900.1 peptide deformylase -
  OCV36_RS16135 fmt 3554654..3555619 (+) 966 WP_135458788.1 methionyl-tRNA formyltransferase -
  OCV36_RS16140 rsmB 3555739..3557019 (+) 1281 WP_017073855.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39999.68 Da        Isoelectric Point: 7.0588

>NTDB_id=91981 OCV36_RS16120 WP_135458784.1 3551762..3552874(-) (dprA) [Vibrio echinoideorum strain DSM 107264]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSPQLQAIGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCSHYPKLLNEAASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICDNGALISEFRPDAKPRPEHFPRRNRIISGLSLGTLVIEAAEKSGSLIT
ARYALEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQSAQDVLVEIKSLLNWSIDQQPSLFEPSQSMGENEQLPFPQLF
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91981 OCV36_RS16120 WP_135458784.1 3551762..3552874(-) (dprA) [Vibrio echinoideorum strain DSM 107264]
GTGAATGAGCAACAACTTAGCGCTTGGCTCACGCTGAGTTTTGTTCCGCAATTGGGTGGCAAGCGACTTTCTCGCCTGCT
GAGTATCGATTCCCCTTCTAATATTGTTGGTTACTCAAGCCCGCAACTGCAAGCGATTGGCTTGTCAGCTAAGCAAATCT
CCTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGCATGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGGCCGCCTCTGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTAACCAGTGGGTTAGCGCTAGGCATCGATGGTTATGCTCATGATGGC
GCTTTGGATAAAGGAGGAGAAACCTTTGCCGTATTAGGCTCAGGTCTTGATTCTATCTACCCAGCACGACACAGAAATTT
AGCCGATAGAATTTGTGATAATGGTGCGTTGATTTCAGAGTTCCGTCCAGACGCCAAACCCAGACCTGAACATTTTCCTC
GTCGTAACCGTATTATTAGTGGCTTATCTTTGGGAACATTAGTTATTGAGGCGGCTGAAAAAAGTGGTTCTTTAATTACG
GCTCGTTATGCCTTAGAACAAGGTAGGGAAGTGTTTGCGCTCCCAGGCTCGATCCATAGCCCAACCAGTCGTGGAGGCAA
TAGCTTAATTAAAGCTGGCGCATGTTTGGTACAGAGTGCTCAAGATGTATTGGTTGAAATAAAGAGTCTGTTAAACTGGT
CTATAGATCAACAGCCAAGCTTGTTCGAACCCTCACAAAGTATGGGTGAGAATGAACAATTGCCATTTCCACAGCTGTTC
GCTAACGTAGGGCTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.48

99.73

0.673
  dprA Vibrio cholerae strain A1552

58.021

100

0.586
  dprA Glaesserella parasuis strain SC1401

48.118

100

0.484
  dprA Legionella pneumophila strain ERS1305867

46.341

88.649

0.411
  dprA Neisseria meningitidis MC58

37.028

100

0.397
  dprA Neisseria meningitidis strain C311

37.028

100

0.397
  dprA Haemophilus influenzae Rd KW20

43.62

91.081

0.397
  dprA Neisseria gonorrhoeae MS11

36.02

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.02

100

0.386
  dprA Acinetobacter baumannii strain A118

40.729

88.919

0.362

Multiple sequence alignment