Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VER99_RS11610 Genome accession   NZ_CP141822
Coordinates   2581230..2582453 (+) Length   407 a.a.
NCBI ID   WP_020333949.1    Uniprot ID   -
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2576230..2587453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS11590 (VER99_11590) ampD 2577263..2577808 (-) 546 WP_020333945.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VER99_RS11595 (VER99_11595) nadC 2577901..2578788 (+) 888 WP_020333946.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VER99_RS11600 (VER99_11600) pilA 2579055..2579513 (+) 459 WP_020333947.1 pilin Machinery gene
  VER99_RS11605 (VER99_11605) pilB 2579514..2581199 (+) 1686 WP_020333948.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VER99_RS11610 (VER99_11610) pilC 2581230..2582453 (+) 1224 WP_020333949.1 type II secretion system F family protein Machinery gene
  VER99_RS11615 (VER99_11615) pilD 2582521..2583390 (+) 870 WP_020333950.1 prepilin peptidase Machinery gene
  VER99_RS11620 (VER99_11620) coaE 2583391..2584005 (+) 615 WP_020333951.1 dephospho-CoA kinase -
  VER99_RS11625 (VER99_11625) zapD 2584032..2584772 (+) 741 WP_020333952.1 cell division protein ZapD -
  VER99_RS11630 (VER99_11630) yacG 2584846..2585040 (+) 195 WP_014232956.1 DNA gyrase inhibitor YacG -
  VER99_RS11635 (VER99_11635) rplS 2585365..2585718 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  VER99_RS11640 (VER99_11640) trmD 2585759..2586520 (-) 762 WP_014232957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VER99_RS11645 (VER99_11645) rimM 2586548..2587096 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  VER99_RS11650 (VER99_11650) rpsP 2587127..2587375 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45051.28 Da        Isoelectric Point: 10.3231

>NTDB_id=919705 VER99_RS11610 WP_020333949.1 2581230..2582453(+) (pilC) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMSEVEVRERLSAQHIKIKKLKKSSISFITKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSNNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASAHFDALYTDLISTGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVMLVALGVSYLMLTQVIPEFEKMFSGFGADLPWFTRQVLDLSAWMQNWGSFIALGALSLIISA
RILVKRSDSFRLMMDRAILRIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDEMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=919705 VER99_RS11610 WP_020333949.1 2581230..2582453(+) (pilC) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAAACGACGACCCCACAACTAAAGAACTTCCGCTGGAAAGGCATTAATAGCTCAGGAAAAAAAACTTCTGGGCAAAC
GCTGGCCATGAGCGAAGTGGAAGTACGCGAACGACTCAGCGCTCAGCACATAAAAATCAAAAAACTGAAAAAAAGTAGTA
TTTCTTTTATAACCAAACTGAGTCATCGGGTAAAAGGCAAAGACATCACCGTTTTTACTCGTCAAATTTCGACTATGCTG
GTCACTGGTGTCCCACTCGTTCAGGCTTTAAAATTGGTTTCCAATAACCATAAAAAAGCCGAGATGAAGTCTATTTTAAT
GAGCGTAACTCGAGCGGTTGAAGCGGGTACACCGATGTCGAAAGCAATGCGCACCGCCAGCGCACATTTTGACGCACTTT
ATACTGACCTTATCTCAACCGGAGAACTCTCAGGCAATCTGGCAGAAGTCTTCGAACGACTGGCCACTTACCGTGAAAAA
AGTGAGGAACTCAGAGCGAAAGTCATCAAAGCCCTGATCTACCCAGCCATGGTTATGTTGGTTGCGCTCGGCGTGTCCTA
TCTAATGCTCACTCAAGTTATCCCTGAGTTTGAAAAAATGTTTTCTGGGTTTGGTGCAGATTTACCTTGGTTCACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGGGTTCATTTATCGCTCTTGGGGCACTTAGCCTAATTATATCAGCA
AGAATACTGGTCAAACGTTCTGATTCTTTTCGCTTGATGATGGATCGAGCCATATTGAGAATTCCCGTTCTTGGCGCTGT
GTTGTCCAAGGCTGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTTAGCGCGGGTATTCCTATTCTGACCAGTT
TAAAAACCACCTCCAAAACGTCAGGAAACCTGCACTATCAGCTGGCAGTCGAAGAAGTCTATCGTGATACAGCAGCTGGT
ATGCCAATGTATGTCGCAATGCGTAACTGCGATGTTTTCCCTGAATTAGTGCTACAAATGGTGATGATTGGAGAAGAATC
AGGCAGGCTTGATGAGATGCTCAATAAAGTCGCAACTATTTATGAGTTCGAAGTAGATAATACCGTCGATAACCTAAGTA
AGATTCTTGAACCGCTGATTATTGTTTTTCTTGGTGTGGTCGTTGGTGGATTAGTGACAGCAATGTACCTGCCAATCTTT
AACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

73.333

99.509

0.73
  pilC Acinetobacter baylyi ADP1

42

98.28

0.413
  pilC Legionella pneumophila strain ERS1305867

41.235

99.509

0.41
  pilG Neisseria gonorrhoeae MS11

40.447

99.017

0.4
  pilG Neisseria meningitidis 44/76-A

40.199

99.017

0.398
  pilC Acinetobacter baumannii D1279779

40.5

98.28

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.399

98.526

0.398