Detailed information NTG0919706

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VER99_RS11615
• Genome accession: NZ_CP141822
• Coordinates: 2582521..2583390 (+)
• Length: 289 a.a.
• NCBI ID: WP_020333950.1
• Uniprot ID: A0AAN1CWE3
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2577521..2588390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VER99_RS11595 (VER99_11595)	nadC	2577901..2578788 (+)	888	WP_020333946.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VER99_RS11600 (VER99_11600)	pilA	2579055..2579513 (+)	459	WP_020333947.1	pilin	Machinery gene
VER99_RS11605 (VER99_11605)	pilB	2579514..2581199 (+)	1686	WP_020333948.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VER99_RS11610 (VER99_11610)	pilC	2581230..2582453 (+)	1224	WP_020333949.1	type II secretion system F family protein	Machinery gene
VER99_RS11615 (VER99_11615)	pilD	2582521..2583390 (+)	870	WP_020333950.1	prepilin peptidase	Machinery gene
VER99_RS11620 (VER99_11620)	coaE	2583391..2584005 (+)	615	WP_020333951.1	dephospho-CoA kinase	-
VER99_RS11625 (VER99_11625)	zapD	2584032..2584772 (+)	741	WP_020333952.1	cell division protein ZapD	-
VER99_RS11630 (VER99_11630)	yacG	2584846..2585040 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
VER99_RS11635 (VER99_11635)	rplS	2585365..2585718 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
VER99_RS11640 (VER99_11640)	trmD	2585759..2586520 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VER99_RS11645 (VER99_11645)	rimM	2586548..2587096 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
VER99_RS11650 (VER99_11650)	rpsP	2587127..2587375 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32310.38 Da
• Isoelectric Point: 6.4408

>NTDB_id=919706 VER99_RS11615 WP_020333950.1 2582521..2583390(+) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=919706 VER99_RS11615 WP_020333950.1 2582521..2583390(+) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.194	99.654	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446