Detailed information NTG0919356

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: VA211_RS00720
• Genome accession: NZ_CP141771
• Coordinates: 146889..147944 (+)
• Length: 351 a.a.
• NCBI ID: WP_324686336.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08204
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 141889..152944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS00690	-	142312..142725 (+)	414	WP_001023005.1	universal stress protein	-
VA211_RS00695	-	142745..143020 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
VA211_RS00700	-	143020..145242 (+)	2223	WP_324685411.1	ATP-dependent Clp protease ATP-binding subunit	-
VA211_RS00705	panD	145232..145582 (+)	351	WP_000142208.1	aspartate 1-decarboxylase	-
VA211_RS00710	-	145593..145886 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
VA211_RS00715	-	145886..146881 (+)	996	WP_324686334.1	PDZ domain-containing protein	-
VA211_RS00720	comB6	146889..147944 (+)	1056	WP_324686336.1	P-type conjugative transfer protein TrbL	Machinery gene
VA211_RS00725	comB7	147960..148085 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
VA211_RS00730	comB8	148082..148819 (+)	738	WP_324685419.1	virB8 family protein	Machinery gene
VA211_RS00735	comB9	148819..149781 (+)	963	WP_324685421.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA211_RS00740	comB10	149774..150910 (+)	1137	WP_324685423.1	DNA type IV secretion system protein ComB10	Machinery gene
VA211_RS00745	-	150976..152387 (+)	1412	Protein_144	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39865.86 Da
• Isoelectric Point: 8.8165

>NTDB_id=919356 VA211_RS00720 WP_324686336.1 146889..147944(+) (comB6) [Helicobacter pylori strain P08204]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFITPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLGHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPVSSSVSSSMRESTTKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=919356 VA211_RS00720 WP_324686336.1 146889..147944(+) (comB6) [Helicobacter pylori strain P08204]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTACACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTCTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGGGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCACCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969