Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN28_RS02155 Genome accession   NZ_CP141725
Coordinates   442541..442930 (-) Length   129 a.a.
NCBI ID   WP_165711840.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 436091..442930 442541..442930 within 0


Gene organization within MGE regions


Location: 436091..442930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS02120 (VNN28_02120) tmk 436091..436720 (-) 630 WP_017369445.1 dTMP kinase -
  VNN28_RS02125 (VNN28_02125) yycF 436931..437632 (+) 702 WP_003133894.1 response regulator YycF -
  VNN28_RS02130 (VNN28_02130) - 437625..439043 (+) 1419 WP_213495700.1 ATP-binding protein -
  VNN28_RS02135 (VNN28_02135) - 439040..439852 (+) 813 WP_338997785.1 MBL fold metallo-hydrolase -
  VNN28_RS02140 (VNN28_02140) groL 439902..441527 (-) 1626 WP_338997787.1 chaperonin GroEL -
  VNN28_RS02145 (VNN28_02145) groES 441556..441837 (-) 282 WP_003133888.1 co-chaperone GroES -
  VNN28_RS02150 (VNN28_02150) - 441953..442483 (-) 531 WP_165711841.1 ClbS/DfsB family four-helix bundle protein -
  VNN28_RS02155 (VNN28_02155) ssbB 442541..442930 (-) 390 WP_165711840.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14820.00 Da        Isoelectric Point: 8.0101

>NTDB_id=918979 VNN28_RS02155 WP_165711840.1 442541..442930(-) (ssbB) [Lactococcus formosensis strain M03102409 EE5d7]
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEVLVKNFDLLESRATIAMRQDSIENNDIDLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918979 VNN28_RS02155 WP_165711840.1 442541..442930(-) (ssbB) [Lactococcus formosensis strain M03102409 EE5d7]
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAGCTAGCGGAACACTGTACATCGTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGGTACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATTGCCATGCGACAAGATTCTATAGAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

55.814

100

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssb Latilactobacillus sakei subsp. sakei 23K

46.429

86.822

0.403