Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN48_RS08200 Genome accession   NZ_CP141723
Coordinates   1675980..1676369 (+) Length   129 a.a.
NCBI ID   WP_213432275.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1675980..1679871 1675980..1676369 within 0


Gene organization within MGE regions


Location: 1675980..1679871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS08200 (VNN48_08195) ssbB 1675980..1676369 (+) 390 WP_213432275.1 single-stranded DNA-binding protein Machinery gene
  VNN48_RS08205 (VNN48_08200) - 1676427..1676957 (+) 531 WP_252175561.1 ClbS/DfsB family four-helix bundle protein -
  VNN48_RS08210 (VNN48_08205) groES 1677074..1677355 (+) 282 WP_003133888.1 co-chaperone GroES -
  VNN48_RS08215 (VNN48_08210) groL 1677384..1679009 (+) 1626 WP_003133890.1 chaperonin GroEL -
  VNN48_RS08220 (VNN48_08215) - 1679059..1679871 (-) 813 WP_017369447.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14834.07 Da        Isoelectric Point: 8.8432

>NTDB_id=918946 VNN48_RS08200 WP_213432275.1 1675980..1676369(+) (ssbB) [Lactococcus formosensis strain PAQ-208]
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEVLVKKFDLLESRATIAMRQDSIENNDLDLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918946 VNN48_RS08200 WP_213432275.1 1675980..1676369(+) (ssbB) [Lactococcus formosensis strain PAQ-208]
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCAGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAGCTAGCGGAACACTGTACATCCTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAGGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGGTACTGGTGAAAAAATTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCTATGCGACAAGATTCTATAGAAAACAATGACCTTGATTTAAAAGAGGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.077

100

0.535
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbA Streptococcus mutans UA159

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395