Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN53_RS02365 Genome accession   NZ_CP141720
Coordinates   485050..485439 (-) Length   129 a.a.
NCBI ID   WP_338962425.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 480050..490439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS02340 (VNN53_02340) - 480131..481549 (+) 1419 WP_338962419.1 ATP-binding protein -
  VNN53_RS02345 (VNN53_02345) - 481546..482358 (+) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  VNN53_RS02350 (VNN53_02350) groL 482410..484035 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN53_RS02355 (VNN53_02355) groES 484064..484345 (-) 282 WP_003133888.1 co-chaperone GroES -
  VNN53_RS02360 (VNN53_02360) - 484462..484992 (-) 531 WP_264308373.1 ClbS/DfsB family four-helix bundle protein -
  VNN53_RS02365 (VNN53_02365) ssbB 485050..485439 (-) 390 WP_338962425.1 single-stranded DNA-binding protein Machinery gene
  VNN53_RS02370 (VNN53_02370) ytpR 485509..486132 (-) 624 WP_042217594.1 YtpR family tRNA-binding protein -
  VNN53_RS02375 (VNN53_02375) - 486134..486454 (-) 321 WP_003133882.1 thioredoxin family protein -
  VNN53_RS02380 (VNN53_02380) - 486451..486738 (-) 288 WP_042217596.1 hypothetical protein -
  VNN53_RS02385 (VNN53_02385) pepA 486937..488004 (+) 1068 WP_003133879.1 glutamyl aminopeptidase -
  VNN53_RS02390 (VNN53_02390) - 488118..488801 (+) 684 WP_019299729.1 phosphatase PAP2 family protein -
  VNN53_RS02395 (VNN53_02395) - 488818..489222 (-) 405 WP_338962431.1 MGMT family protein -
  VNN53_RS02400 (VNN53_02400) - 489212..489721 (-) 510 WP_338962434.1 methylated-DNA--[protein]-cysteine S-methyltransferase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14714.84 Da        Isoelectric Point: 9.3830

>NTDB_id=918841 VNN53_RS02365 WP_338962425.1 485050..485439(-) (ssbB) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCTSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATIAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918841 VNN53_RS02365 WP_338962425.1 485050..485439(-) (ssbB) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTTTTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTCACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTACGTCTTATGCAAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGACCTTTTGGAAAGTCGCGCAAC
TATTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTGAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

100

0.504
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372