Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | VNN47_RS08595 | Genome accession | NZ_CP141709 |
| Coordinates | 1685015..1685404 (+) | Length | 129 a.a. |
| NCBI ID | WP_042217592.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain VC13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1685015..1688909 | 1685015..1685404 | within | 0 |
Gene organization within MGE regions
Location: 1685015..1688909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN47_RS08595 (VNN47_08560) | ssbB | 1685015..1685404 (+) | 390 | WP_042217592.1 | single-stranded DNA-binding protein | Machinery gene |
| VNN47_RS08600 (VNN47_08565) | - | 1685462..1685992 (+) | 531 | WP_407350241.1 | ClbS/DfsB family four-helix bundle protein | - |
| VNN47_RS08605 (VNN47_08570) | groES | 1686109..1686390 (+) | 282 | WP_003133888.1 | co-chaperone GroES | - |
| VNN47_RS08610 (VNN47_08575) | groL | 1686419..1688044 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| VNN47_RS08615 (VNN47_08580) | - | 1688097..1688909 (-) | 813 | WP_003133892.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14703.88 Da Isoelectric Point: 9.3830
>NTDB_id=918676 VNN47_RS08595 WP_042217592.1 1685015..1685404(+) (ssbB) [Lactococcus garvieae strain VC13]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIESSALNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIESSALNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=918676 VNN47_RS08595 WP_042217592.1 1685015..1685404(+) (ssbB) [Lactococcus garvieae strain VC13]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAGTAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAGTAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
56.589 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.769 |
100 |
0.512 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
49.231 |
100 |
0.496 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
40.323 |
96.124 |
0.388 |