Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN37_RS02720 Genome accession   NZ_CP141707
Coordinates   527180..527569 (-) Length   129 a.a.
NCBI ID   WP_042217592.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 520727..527569 527180..527569 within 0


Gene organization within MGE regions


Location: 520727..527569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS02685 (VNN37_02685) tmk 520727..521356 (-) 630 WP_042217509.1 dTMP kinase -
  VNN37_RS02690 (VNN37_02690) yycF 521567..522268 (+) 702 WP_003133894.1 response regulator YycF -
  VNN37_RS02695 (VNN37_02695) - 522261..523679 (+) 1419 WP_339000588.1 ATP-binding protein -
  VNN37_RS02700 (VNN37_02700) - 523676..524488 (+) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  VNN37_RS02705 (VNN37_02705) groL 524540..526165 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN37_RS02710 (VNN37_02710) groES 526194..526475 (-) 282 WP_003133888.1 co-chaperone GroES -
  VNN37_RS02715 (VNN37_02715) - 526592..527122 (-) 531 WP_042217590.1 ClbS/DfsB family four-helix bundle protein -
  VNN37_RS02720 (VNN37_02720) ssbB 527180..527569 (-) 390 WP_042217592.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14703.88 Da        Isoelectric Point: 9.3830

>NTDB_id=918619 VNN37_RS02720 WP_042217592.1 527180..527569(-) (ssbB) [Lactococcus garvieae strain M21102102]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIESSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918619 VNN37_RS02720 WP_042217592.1 527180..527569(-) (ssbB) [Lactococcus garvieae strain M21102102]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGATCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAGTAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbA Streptococcus mutans UA159

49.231

100

0.496
  ssb Latilactobacillus sakei subsp. sakei 23K

40.323

96.124

0.388