Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN52_RS02225 Genome accession   NZ_CP141701
Coordinates   456734..457123 (-) Length   129 a.a.
NCBI ID   WP_019291355.1    Uniprot ID   A0A252CCZ8
Organism   Lactococcus petauri strain M18012501 FF2g6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 450282..457123 456734..457123 within 0


Gene organization within MGE regions


Location: 450282..457123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN52_RS02190 (VNN52_02190) tmk 450282..450911 (-) 630 WP_019291350.1 dTMP kinase -
  VNN52_RS02195 (VNN52_02195) yycF 451122..451823 (+) 702 WP_003133894.1 response regulator YycF -
  VNN52_RS02200 (VNN52_02200) - 451816..453234 (+) 1419 WP_019291351.1 ATP-binding protein -
  VNN52_RS02205 (VNN52_02205) - 453231..454043 (+) 813 WP_019291352.1 MBL fold metallo-hydrolase -
  VNN52_RS02210 (VNN52_02210) groL 454093..455718 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN52_RS02215 (VNN52_02215) groES 455748..456029 (-) 282 WP_019291353.1 co-chaperone GroES -
  VNN52_RS02220 (VNN52_02220) - 456147..456677 (-) 531 WP_019291354.1 ClbS/DfsB family four-helix bundle protein -
  VNN52_RS02225 (VNN52_02225) ssbB 456734..457123 (-) 390 WP_019291355.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14707.85 Da        Isoelectric Point: 9.3830

>NTDB_id=918530 VNN52_RS02225 WP_019291355.1 456734..457123(-) (ssbB) [Lactococcus petauri strain M18012501 FF2g6]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918530 VNN52_RS02225 WP_019291355.1 456734..457123(-) (ssbB) [Lactococcus petauri strain M18012501 FF2g6]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAGCGCTATGTAACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CCZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395