Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABZO29_RS28710 Genome accession   NZ_CP160403
Coordinates   6249884..6250564 (+) Length   226 a.a.
NCBI ID   WP_367323062.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6244884..6255564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS28680 (ABZO29_28680) - 6246094..6246288 (+) 195 WP_367323059.1 hypothetical protein -
  ABZO29_RS28685 (ABZO29_28685) - 6246382..6246768 (-) 387 WP_367323060.1 hypothetical protein -
  ABZO29_RS28700 (ABZO29_28700) tig 6247443..6248834 (+) 1392 WP_367323061.1 trigger factor -
  ABZO29_RS28705 (ABZO29_28705) clpP 6249205..6249813 (+) 609 WP_055570713.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABZO29_RS28710 (ABZO29_28710) clpP 6249884..6250564 (+) 681 WP_367323062.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABZO29_RS28715 (ABZO29_28715) clpX 6250748..6252034 (+) 1287 WP_367323063.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABZO29_RS28720 (ABZO29_28720) - 6252101..6253111 (-) 1011 WP_367323064.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25071.48 Da        Isoelectric Point: 4.6487

>NTDB_id=918371 ABZO29_RS28710 WP_367323062.1 6249884..6250564(+) (clpP) [Streptomyces sp. HUAS ZL42]
MNDFPGSGLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=918371 ABZO29_RS28710 WP_367323062.1 6249884..6250564(+) (clpP) [Streptomyces sp. HUAS ZL42]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACACGCGCCGAGTACACGGGTCCGGCCGCCGAGTCCCGCTATGT
GATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCGGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGACAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCGAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGCCTGATCGACCAGA
TCATCTCGACCCGGAAGATGAACAACGCGTCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376