Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABZO29_RS28705 Genome accession   NZ_CP160403
Coordinates   6249205..6249813 (+) Length   202 a.a.
NCBI ID   WP_055570713.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6244205..6254813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS28675 (ABZO29_28675) - 6244485..6245651 (-) 1167 WP_367323058.1 acyltransferase family protein -
  ABZO29_RS28680 (ABZO29_28680) - 6246094..6246288 (+) 195 WP_367323059.1 hypothetical protein -
  ABZO29_RS28685 (ABZO29_28685) - 6246382..6246768 (-) 387 WP_367323060.1 hypothetical protein -
  ABZO29_RS28700 (ABZO29_28700) tig 6247443..6248834 (+) 1392 WP_367323061.1 trigger factor -
  ABZO29_RS28705 (ABZO29_28705) clpP 6249205..6249813 (+) 609 WP_055570713.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABZO29_RS28710 (ABZO29_28710) clpP 6249884..6250564 (+) 681 WP_367323062.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABZO29_RS28715 (ABZO29_28715) clpX 6250748..6252034 (+) 1287 WP_367323063.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABZO29_RS28720 (ABZO29_28720) - 6252101..6253111 (-) 1011 WP_367323064.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21356.23 Da        Isoelectric Point: 4.6747

>NTDB_id=918370 ABZO29_RS28705 WP_055570713.1 6249205..6249813(+) (clpP) [Streptomyces sp. HUAS ZL42]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSVE
QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=918370 ABZO29_RS28705 WP_055570713.1 6249205..6249813(+) (clpP) [Streptomyces sp. HUAS ZL42]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCGGACCCGG
ACAAGGACATTTACCTGTACATCAACAGCCCCGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGCCTCGCCGGCTCGGCCTCCGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGTCGGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGCACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

84.653

0.5
  clpP Lactococcus lactis subsp. cremoris KW2

54.348

91.089

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.514

91.584

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.804

91.089

0.49
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446
  clpP Streptococcus thermophilus LMG 18311

52.023

85.644

0.446
  clpP Streptococcus thermophilus LMD-9

52.023

85.644

0.446