Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN38_RS02240 Genome accession   NZ_CP141697
Coordinates   457254..457643 (-) Length   129 a.a.
NCBI ID   WP_019293857.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-77-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 450802..457643 457254..457643 within 0


Gene organization within MGE regions


Location: 450802..457643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS02205 (VNN38_02205) tmk 450802..451431 (-) 630 WP_338955405.1 dTMP kinase -
  VNN38_RS02210 (VNN38_02210) yycF 451642..452343 (+) 702 WP_003133894.1 response regulator YycF -
  VNN38_RS02215 (VNN38_02215) - 452336..453754 (+) 1419 WP_019293860.1 ATP-binding protein -
  VNN38_RS02220 (VNN38_02220) - 453751..454563 (+) 813 WP_019293859.1 MBL fold metallo-hydrolase -
  VNN38_RS02225 (VNN38_02225) groL 454613..456238 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN38_RS02230 (VNN38_02230) groES 456268..456549 (-) 282 WP_019291353.1 co-chaperone GroES -
  VNN38_RS02235 (VNN38_02235) - 456667..457197 (-) 531 WP_019293858.1 ClbS/DfsB family four-helix bundle protein -
  VNN38_RS02240 (VNN38_02240) ssbB 457254..457643 (-) 390 WP_019293857.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14706.87 Da        Isoelectric Point: 9.6892

>NTDB_id=918349 VNN38_RS02240 WP_019293857.1 457254..457643(-) (ssbB) [Lactococcus petauri strain R21-77-2]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKNTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918349 VNN38_RS02240 WP_019293857.1 457254..457643(-) (ssbB) [Lactococcus petauri strain R21-77-2]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAAATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGAAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395