Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV20_RS16465 Genome accession   NZ_AP025470
Coordinates   3632879..3633991 (-) Length   370 a.a.
NCBI ID   WP_086775444.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3627879..3638991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS16435 hemF 3628402..3629319 (-) 918 WP_086775448.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV20_RS16440 - 3629339..3629896 (-) 558 WP_086775447.1 L-threonylcarbamoyladenylate synthase -
  OCV20_RS16445 purE 3630092..3630577 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV20_RS16450 - 3630583..3631713 (+) 1131 WP_086775446.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV20_RS16455 - 3631818..3632387 (-) 570 WP_086775445.1 type I DNA topoisomerase -
  OCV20_RS16460 - 3632400..3632876 (-) 477 WP_029235873.1 DUF494 family protein -
  OCV20_RS16465 dprA 3632879..3633991 (-) 1113 WP_086775444.1 DNA-processing protein DprA Machinery gene
  OCV20_RS16470 - 3633988..3635079 (-) 1092 WP_086775443.1 LysM peptidoglycan-binding domain-containing protein -
  OCV20_RS16475 def 3635220..3635732 (+) 513 WP_017058772.1 peptide deformylase -
  OCV20_RS16480 fmt 3635770..3636717 (+) 948 WP_017058773.1 methionyl-tRNA formyltransferase -
  OCV20_RS16485 rsmB 3636810..3638090 (+) 1281 WP_017058774.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40104.90 Da        Isoelectric Point: 7.5354

>NTDB_id=91802 OCV20_RS16465 WP_086775444.1 3632879..3633991(-) (dprA) [Vibrio coralliirubri strain DSM 27495]
MNEQQLIAWLSLSFVPQLGGKRLSRLLSVDSPSNIVGYSSQQLQAIGLSAKQISYLRQQAPKEVEACLAWQARQPNHHII
TPNCPHYPKLLNETASTPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPNKSENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91802 OCV20_RS16465 WP_086775444.1 3632879..3633991(-) (dprA) [Vibrio coralliirubri strain DSM 27495]
GTGAATGAGCAACAACTGATCGCTTGGCTCTCGCTGAGCTTTGTTCCGCAACTGGGTGGTAAGCGTCTTTCTCGTCTGCT
GAGTGTTGATTCCCCATCGAATATTGTTGGTTACTCCAGCCAACAACTGCAAGCGATTGGTTTGTCAGCCAAGCAAATCT
CGTACTTAAGACAGCAAGCCCCTAAAGAAGTGGAGGCTTGTCTGGCGTGGCAAGCGAGGCAGCCCAACCATCACATCATT
ACCCCTAATTGTCCTCATTATCCCAAACTGCTGAACGAGACCGCCTCCACGCCAAGTGTGCTTTTCGTTAAGGGGCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTTGGCAGTCGCAACGCCAGTCTCGAAGGGCTGCAAACCGCGAAGTCCT
TTGCTAAAGAGTTTGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTTGGTATTGATGGTTATGCTCATGATGGT
GCTTTAGATAAAGGAGGGGAAACTTTTGCGGTGTTGGGTTCTGGCTTGGATTCTATTTACCCTGCGCGACACCGAAATTT
AGCCGATAGGATCTGTGAGAATGGCGCGCTGATCTCAGAATTCCGCCCAAGCGCTAAGCCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTCGTTGTTGAGGCGGCTGAGAAAAGCGGTTCTCTGATTACG
GCGCGTTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGCTTCCCGGTTCGATTCATAACCCAACCAGTCGCGGAGGCAA
CAGTCTAATTAAGGCAGGAGCATGTTTGGTACAGAGTGCTCAAGATGTTCTAATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAACCTACGCCGAACAAGAGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(304-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.824

100

0.595
  dprA Glaesserella parasuis strain SC1401

47.826

99.459

0.476
  dprA Legionella pneumophila strain ERS1305867

47.256

88.649

0.419
  dprA Haemophilus influenzae Rd KW20

45.104

91.081

0.411
  dprA Neisseria meningitidis strain C311

37.688

100

0.405
  dprA Neisseria meningitidis MC58

37.688

100

0.405
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.395
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.395
  dprA Acinetobacter baylyi ADP1

39.881

90.811

0.362

Multiple sequence alignment