Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV19_RS02670 Genome accession   NZ_AP025463
Coordinates   530112..531341 (-) Length   409 a.a.
NCBI ID   WP_065676622.1    Uniprot ID   A0A1C3JEZ9
Organism   Vibrio celticus strain CECT 7224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525112..536341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS02630 rpsP 525208..525456 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV19_RS02635 rimM 525481..526035 (+) 555 WP_017063236.1 ribosome maturation factor RimM -
  OCV19_RS02640 trmD 526062..526802 (+) 741 WP_065676619.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCV19_RS02645 rplS 526862..527215 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  OCV19_RS02650 yacG 527514..527711 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  OCV19_RS02655 zapD 527793..528533 (-) 741 WP_017063237.1 cell division protein ZapD -
  OCV19_RS02660 coaE 528560..529174 (-) 615 WP_065676620.1 dephospho-CoA kinase -
  OCV19_RS02665 pilD 529177..530046 (-) 870 WP_065676621.1 A24 family peptidase Machinery gene
  OCV19_RS02670 pilC 530112..531341 (-) 1230 WP_065676622.1 type II secretion system F family protein Machinery gene
  OCV19_RS02675 pilB 531357..533042 (-) 1686 WP_065676623.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV19_RS02680 - 533042..533485 (-) 444 WP_065676624.1 type IV pilin protein -
  OCV19_RS02685 nadC 533740..534630 (-) 891 WP_017065901.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV19_RS02690 ampD 534714..535313 (+) 600 WP_065676625.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45201.25 Da        Isoelectric Point: 10.1285

>NTDB_id=91694 OCV19_RS02670 WP_065676622.1 530112..531341(-) (pilC) [Vibrio celticus strain CECT 7224]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYAAVGIGLVVL
IIYQLCQRSHSIRLSVSRLGLRFPVLGGVLAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=91694 OCV19_RS02670 WP_065676622.1 530112..531341(-) (pilC) [Vibrio celticus strain CECT 7224]
ATGAGTAGCAAGTCCAAACAATCACAACTAAAAAGCTATCACTGGAAAGGCATTAATAGTTCCGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTCACCGAATTGGAAGTACGAGAAAAGCTCAAAGAGCAGCACATTCAGATTAAGAAAATCAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACCCATAGAGTCAAAGCCAAAGACATCACTATTTTGACTAGGCAGCTTGCTACT
ATGCTCGCCACTGGCGTGCCTATCGTACAAGCCATCAAGTTAGTGTCAGACAATCACCGAAAAGCTGAAATGAAATCAAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCGATGCGAACTGCAAGCCGCCACTTTGATG
ACCTCTATACTGATTTAGTCGCCACAGGTGAACTGTCAGGCAACCTCGCACAAGTGTTCGAACGCTTAGCGACCTATAGA
GAAAAAAGCGAGCAGTTAAAGTCCAAAGTCGTCAAAGCACTGATCTACCCCGCGATGGTGGTCACCGTTGCACTGACCGT
TTCTTATTTAATGCTGACTATGGTGATTCCAGAGTTTGAGTCGATGTTTTCCGGCTTTGGCGCCGACCTGCCTTGGTTCA
CCCAACAAGTACTCTACCTTTCCCATTGGATGCAGGCTTACAGTTTTTATGCGGCTGTCGGCATCGGGCTTGTTGTCCTG
ATTATTTACCAACTGTGTCAGCGTTCCCACTCGATCAGACTGTCTGTTAGCCGGCTAGGATTACGCTTTCCTGTTCTTGG
TGGCGTATTAGCCAAAGCCTCTATTGCCAAATTTAGCCGAACCTTATCAACCAGCTTTAGTTCTGGCATTCCGATTTTAA
TGAGCCTCAAAACCACAGCCAAAACCGCAGGCAATCTTCATTATGAATCGGCCATCATTGAAGTTCACCGAGAAACGGCT
GCAGGCATGCCGATGTATATCGCAATGCGCAATACCAATGCCTTCCCCGAAATGGTGTTACAGATGGTGATGATTGGCGA
AGAGTCTGGCAACCTTGATGATATGCTCAATAAAGTAGCGTCGATTTACGAGTTTGAAGTAGACAACACAGTCGACAATT
TAGGCAAGATTCTAGAGCCACTGATCATCGTGTTTTTAGGCACTGTCGTTGGCGGGCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JEZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80

97.8

0.782
  pilC Vibrio campbellii strain DS40M4

73.529

99.756

0.733
  pilC Legionella pneumophila strain ERS1305867

42.893

98.044

0.421
  pilC Acinetobacter baylyi ADP1

41.565

100

0.416
  pilC Acinetobacter baumannii D1279779

41.832

98.778

0.413
  pilC Pseudomonas stutzeri DSM 10701

40.657

96.822

0.394
  pilG Neisseria gonorrhoeae MS11

39.85

97.555

0.389
  pilG Neisseria meningitidis 44/76-A

39.599

97.555

0.386

Multiple sequence alignment