Detailed information NTG0091693

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCV19_RS02665
• Genome accession: NZ_AP025463
• Coordinates: 529177..530046 (-)
• Length: 289 a.a.
• NCBI ID: WP_065676621.1
• Uniprot ID: A0A1C3JF80
• Organism: Vibrio celticus strain CECT 7224
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 524177..535046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV19_RS02630	rpsP	525208..525456 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
OCV19_RS02635	rimM	525481..526035 (+)	555	WP_017063236.1	ribosome maturation factor RimM	-
OCV19_RS02640	trmD	526062..526802 (+)	741	WP_065676619.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCV19_RS02645	rplS	526862..527215 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
OCV19_RS02650	yacG	527514..527711 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
OCV19_RS02655	zapD	527793..528533 (-)	741	WP_017063237.1	cell division protein ZapD	-
OCV19_RS02660	coaE	528560..529174 (-)	615	WP_065676620.1	dephospho-CoA kinase	-
OCV19_RS02665	pilD	529177..530046 (-)	870	WP_065676621.1	A24 family peptidase	Machinery gene
OCV19_RS02670	pilC	530112..531341 (-)	1230	WP_065676622.1	type II secretion system F family protein	Machinery gene
OCV19_RS02675	pilB	531357..533042 (-)	1686	WP_065676623.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCV19_RS02680	-	533042..533485 (-)	444	WP_065676624.1	type IV pilin protein	-
OCV19_RS02685	nadC	533740..534630 (-)	891	WP_017065901.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32593.82 Da
• Isoelectric Point: 7.6347

>NTDB_id=91693 OCV19_RS02665 WP_065676621.1 529177..530046(-) (pilD) [Vibrio celticus strain CECT 7224]
MEVFHYYPWLFTVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTMVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=91693 OCV19_RS02665 WP_065676621.1 529177..530046(-) (pilD) [Vibrio celticus strain CECT 7224]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCACCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAATATTTTTCTCAATATAAAA
TTCCAGCGCCAGAGGGAAAGTTCAATCTCAGCATTCCTCGCTCTACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GATAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGTAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATACTTTGCACAATGGTTGCTAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACCTTCGCACTGATTACCGCGACCTTTATCGATCTCGATACTATGTTGTTGCCTGATCAAATTACCTTGCCT
TTGGTATGGTCCGGTATCGCTTTAGCACTGTTTAATATCAGCCCAGTATCGCTGCAAGATTCTGTGGTTGGCGCAATGGC
TGGCTACCTCGCTTTATGGTCTGTTTATTGGTTGTTCAAACTACTCACAGGTAAAGAAGGCATGGGTTACGGTGACTTCA
AACTCCTGGCTGCACTTGGTGCATGGCTTGGTTGGCAACACCTACCGATGATCATCCTTTTATCTTCACTCGTAGGCCTT
GTGTTTGGTTTGATTCAACTTCGCCTGAAACAGCAAGGCATAGATAAAGCCTTTCCGTTCGGCCCTTACCTTGCAATTGC
GGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A1C3JF80

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	68.056	99.654	0.678
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436