Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U6958_RS07645 Genome accession   NZ_CP141274
Coordinates   1365305..1366522 (-) Length   405 a.a.
NCBI ID   WP_016445610.1    Uniprot ID   A0AAJ1HZR1
Organism   Delftia lacustris strain DSM 21246     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360305..1371522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6958_RS07615 - 1361136..1362092 (+) 957 WP_047217092.1 ATP-binding protein -
  U6958_RS07620 - 1362143..1362649 (+) 507 WP_016445605.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  U6958_RS07625 - 1362660..1362914 (-) 255 WP_074921555.1 DNA gyrase inhibitor YacG -
  U6958_RS07630 zapD 1362914..1363669 (-) 756 WP_016445607.1 cell division protein ZapD -
  U6958_RS07635 coaE 1363759..1364397 (-) 639 WP_016445608.1 dephospho-CoA kinase -
  U6958_RS07640 pilD 1364412..1365305 (-) 894 WP_016445609.1 A24 family peptidase Machinery gene
  U6958_RS07645 pilC 1365305..1366522 (-) 1218 WP_016445610.1 type II secretion system F family protein Machinery gene
  U6958_RS07650 pilB 1366561..1368303 (-) 1743 WP_034364744.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U6958_RS07655 - 1368556..1369668 (+) 1113 WP_016445612.1 site-specific integrase -
  U6958_RS07660 - 1369922..1370170 (-) 249 WP_016445613.1 helix-turn-helix domain-containing protein -
  U6958_RS07665 - 1370290..1371423 (+) 1134 WP_016445614.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44446.30 Da        Isoelectric Point: 9.3922

>NTDB_id=916741 U6958_RS07645 WP_016445610.1 1365305..1366522(-) (pilC) [Delftia lacustris strain DSM 21246]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=916741 U6958_RS07645 WP_016445610.1 1365305..1366522(-) (pilC) [Delftia lacustris strain DSM 21246]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATCGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAGGAAGTGTTCACCTCGTTCGGCGCCGACCTGCCGGCACCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCTATGACCAATGCCAATGTCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCTATCGACCATATGCTGGGCAAGGCGGCCGATTTCTATGAAGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGTC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTACCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.295

98.025

0.385
  pilC Thermus thermophilus HB27

37.5

98.765

0.37