Detailed information NTG0916740

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U6958_RS07640
• Genome accession: NZ_CP141274
• Coordinates: 1364412..1365305 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia lacustris strain DSM 21246
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1359412..1370305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6958_RS07610	argJ	1359738..1360970 (+)	1233	WP_074921462.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
U6958_RS07615	-	1361136..1362092 (+)	957	WP_047217092.1	ATP-binding protein	-
U6958_RS07620	-	1362143..1362649 (+)	507	WP_016445605.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
U6958_RS07625	-	1362660..1362914 (-)	255	WP_074921555.1	DNA gyrase inhibitor YacG	-
U6958_RS07630	zapD	1362914..1363669 (-)	756	WP_016445607.1	cell division protein ZapD	-
U6958_RS07635	coaE	1363759..1364397 (-)	639	WP_016445608.1	dephospho-CoA kinase	-
U6958_RS07640	pilD	1364412..1365305 (-)	894	WP_016445609.1	A24 family peptidase	Machinery gene
U6958_RS07645	pilC	1365305..1366522 (-)	1218	WP_016445610.1	type II secretion system F family protein	Machinery gene
U6958_RS07650	pilB	1366561..1368303 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U6958_RS07655	-	1368556..1369668 (+)	1113	WP_016445612.1	site-specific integrase	-
U6958_RS07660	-	1369922..1370170 (-)	249	WP_016445613.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=916740 U6958_RS07640 WP_016445609.1 1364412..1365305(-) (pilD) [Delftia lacustris strain DSM 21246]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=916740 U6958_RS07640 WP_016445609.1 1364412..1365305(-) (pilD) [Delftia lacustris strain DSM 21246]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407