Detailed information NTG0916499

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: U3649_RS06840
• Genome accession: NZ_CP141262
• Coordinates: 1633937..1635214 (-)
• Length: 425 a.a.
• NCBI ID: WP_407354564.1
• Uniprot ID: -
• Organism: Luteimonas sp. R10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1628937..1640214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U3649_RS06825 (U3649_06790)	-	1630914..1631900 (+)	987	WP_407354109.1	Nudix family hydrolase	-
U3649_RS06830 (U3649_06795)	coaE	1632213..1632830 (-)	618	WP_407354110.1	dephospho-CoA kinase	-
U3649_RS06835 (U3649_06800)	pilD	1633050..1633919 (-)	870	WP_407354111.1	prepilin peptidase	Machinery gene
U3649_RS06840 (U3649_06805)	pilC	1633937..1635214 (-)	1278	WP_407354564.1	type II secretion system F family protein	Machinery gene
U3649_RS06845 (U3649_06810)	pilB	1635501..1637219 (-)	1719	WP_407354112.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U3649_RS06850 (U3649_06815)	-	1637481..1638332 (+)	852	WP_407354113.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46429.01 Da
• Isoelectric Point: 10.2678

>NTDB_id=916499 U3649_RS06840 WP_407354564.1 1633937..1635214(-) (pilC) [Luteimonas sp. R10]
MAVTRTAAKTAARKGARPATARQGVTLDTFVWEGTDKRGTKMKGEQQAKNANMLRAELRKQGINPTIVKTKSKPLFGSAG
RKITPKEIAVFSRQIATMIKSGVPIVQALEIIGNGHKNPKMASMVNAIRTDIENGTSFAEALGQFPVQFDELTRNLVRVG
EAAGVLETVLDTIATYKENIESLKGKIKKAMFYPAVVIAVAILVSAILLIFVVPQFEQVFVGFGADLPAFTQLIVAASRF
MVSYWWMLLLIAVVAIFGFIFMYKRSLPLQHFVDRMMLKIPVLGVILHNSAIARFARTLATTFKAGVPLVEALESVAGAT
GNSVYEKATLRIRDDVSVGYQMNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEFYEEEVNNAVDALSSLIEPMVM
IFIGILVGAMVIGMYLPIFKLAAVV

Nucleotide

• Length: 1278 bp

>NTDB_id=916499 U3649_RS06840 WP_407354564.1 1633937..1635214(-) (pilC) [Luteimonas sp. R10]
ATGGCCGTGACTCGTACCGCCGCCAAGACCGCCGCGCGCAAGGGGGCCAGGCCCGCCACCGCGCGTCAGGGCGTGACCCT
CGACACCTTCGTCTGGGAGGGCACCGACAAGCGCGGCACCAAGATGAAGGGCGAGCAGCAGGCGAAGAACGCCAATATGT
TGCGCGCCGAACTGCGCAAGCAGGGCATCAACCCTACCATCGTCAAGACCAAGTCCAAGCCGCTGTTCGGCAGCGCCGGG
CGCAAGATCACGCCGAAGGAGATCGCGGTCTTCAGCCGCCAGATCGCCACCATGATCAAGTCCGGCGTGCCGATCGTGCA
GGCGCTGGAGATCATCGGCAACGGACACAAGAACCCGAAGATGGCGTCGATGGTCAACGCCATCCGCACCGACATCGAGA
ACGGCACCTCCTTCGCCGAAGCGCTGGGCCAGTTTCCTGTCCAGTTCGACGAGCTGACCCGCAATCTGGTGAGGGTCGGC
GAGGCGGCGGGCGTGCTGGAGACGGTGCTCGACACCATCGCCACCTACAAGGAGAACATCGAGAGCCTGAAGGGCAAGAT
CAAGAAGGCCATGTTCTATCCGGCCGTGGTGATCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTAC
CGCAGTTCGAACAGGTGTTCGTAGGCTTCGGCGCCGACCTGCCGGCATTCACCCAATTGATCGTTGCCGCCAGCCGCTTC
ATGGTTTCCTACTGGTGGATGCTGCTGTTGATCGCCGTGGTCGCGATCTTCGGCTTCATCTTCATGTACAAACGCTCGCT
CCCGCTCCAGCACTTCGTCGACCGGATGATGCTCAAGATTCCGGTACTCGGCGTCATCCTGCACAACTCGGCGATCGCAC
GCTTCGCGCGCACCCTGGCCACCACCTTCAAAGCCGGCGTGCCGCTGGTCGAGGCGCTGGAATCGGTGGCGGGCGCCACA
GGCAACTCCGTCTACGAGAAGGCCACCCTGCGCATCCGCGACGACGTCTCCGTGGGTTACCAAATGAACATGGCGATGAA
GCAGGTGAATCTGTTCCCGCATATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCAGGCGCGTTGGACTCGATGCTGT
TCAAGGTGGCCGAGTTCTATGAGGAAGAGGTGAACAACGCGGTGGATGCGCTGTCGAGTCTGATCGAGCCGATGGTCATG
ATCTTTATCGGCATCCTCGTGGGCGCTATGGTGATCGGCATGTACCTGCCGATCTTCAAGCTCGCCGCCGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (91-214)

• Type II secretion system (T2SS), protein F (T2SSF) (295-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	54.887	93.882	0.515
pilC	Pseudomonas stutzeri DSM 10701	53.086	95.294	0.506
pilC	Acinetobacter baylyi ADP1	51.478	95.529	0.492
pilC	Acinetobacter baumannii D1279779	50.75	94.118	0.478
pilG	Neisseria gonorrhoeae MS11	45.5	94.118	0.428
pilG	Neisseria meningitidis 44/76-A	45.25	94.118	0.426
pilC	Vibrio cholerae strain A1552	39.259	95.294	0.374
pilC	Vibrio campbellii strain DS40M4	39.348	93.882	0.369