Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U3649_RS06835 Genome accession   NZ_CP141262
Coordinates   1633050..1633919 (-) Length   289 a.a.
NCBI ID   WP_407354111.1    Uniprot ID   -
Organism   Luteimonas sp. R10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628050..1638919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3649_RS06825 (U3649_06790) - 1630914..1631900 (+) 987 WP_407354109.1 Nudix family hydrolase -
  U3649_RS06830 (U3649_06795) coaE 1632213..1632830 (-) 618 WP_407354110.1 dephospho-CoA kinase -
  U3649_RS06835 (U3649_06800) pilD 1633050..1633919 (-) 870 WP_407354111.1 prepilin peptidase Machinery gene
  U3649_RS06840 (U3649_06805) pilC 1633937..1635214 (-) 1278 WP_407354564.1 type II secretion system F family protein Machinery gene
  U3649_RS06845 (U3649_06810) pilB 1635501..1637219 (-) 1719 WP_407354112.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U3649_RS06850 (U3649_06815) - 1637481..1638332 (+) 852 WP_407354113.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31902.95 Da        Isoelectric Point: 7.9251

>NTDB_id=916498 U3649_RS06835 WP_407354111.1 1633050..1633919(-) (pilD) [Luteimonas sp. R10]
MAFLDQHPGLGFPAAAGLGLLVGSFLNVVILRLPRRLEWEWKRDSREILEEPELYDPPPPGIVVERSHCPHCGHQLSWYE
NIPVFSWLALRGKCRHCKAPISIQYPLVELLTMLLVVACVWRFGFGWQGFGAIVLTCFLIALSGIDLRTHLLPDQLTLPL
MWLGLIAAADNLYMPAKPALLGAVAGYVSLWSVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLTGILPIILLSAVSGAIL
GSIWLAMKGRDRATPIPFGPFLAIAGWVVFMWGGDLMTLYLRYSGLSLT

Nucleotide


Download         Length: 870 bp        

>NTDB_id=916498 U3649_RS06835 WP_407354111.1 1633050..1633919(-) (pilD) [Luteimonas sp. R10]
ATGGCCTTCCTCGACCAGCATCCCGGTCTCGGTTTCCCGGCCGCGGCCGGACTGGGGCTGCTGGTGGGCAGCTTCCTCAA
CGTCGTAATCCTGCGCCTGCCCAGGCGGCTGGAGTGGGAGTGGAAGCGCGATTCGCGTGAGATCCTGGAGGAGCCGGAGC
TGTACGATCCGCCGCCGCCGGGAATCGTGGTAGAACGCTCGCATTGCCCGCACTGCGGCCACCAGCTGTCCTGGTACGAG
AACATCCCGGTGTTCAGCTGGCTGGCGCTGCGCGGCAAGTGCCGCCATTGCAAGGCGCCGATCTCGATCCAGTACCCGCT
GGTCGAGCTGCTGACGATGCTGCTGGTGGTGGCCTGCGTCTGGCGGTTCGGGTTCGGCTGGCAGGGGTTCGGCGCGATCG
TGCTGACGTGCTTCCTGATCGCGCTGTCGGGCATCGACCTGCGCACCCACCTGCTGCCGGACCAGTTGACCCTGCCGCTC
ATGTGGCTGGGCCTGATCGCCGCGGCCGACAACCTGTACATGCCGGCCAAGCCGGCGCTGCTGGGCGCGGTGGCCGGCTA
CGTGAGCCTGTGGTCGGTGTGGTGGCTGTTCAAGCAGCTCACCGGCAAGGAAGGCATGGGCCATGGCGACTTCAAGCTGC
TGGCGGCGCTGGGGGCCTGGTGCGGGCTGACCGGCATCCTGCCGATCATCCTGCTGTCGGCGGTCAGCGGGGCGATCCTC
GGCTCGATCTGGCTGGCGATGAAGGGCCGCGACCGCGCCACGCCGATCCCGTTCGGGCCGTTCCTGGCGATCGCCGGCTG
GGTGGTCTTCATGTGGGGCGGCGATCTGATGACCCTGTACCTGCGCTACAGCGGCCTCTCCCTCACGTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.648

98.27

0.488
  pilD Vibrio cholerae strain A1552

51.087

95.502

0.488
  pilD Acinetobacter baumannii D1279779

48.264

99.654

0.481
  pilD Acinetobacter nosocomialis M2

48.227

97.578

0.471
  pilD Neisseria gonorrhoeae MS11

45.756

93.772

0.429