Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCU36_RS12535 Genome accession   NZ_AP025458
Coordinates   2756155..2757837 (-) Length   560 a.a.
NCBI ID   WP_261838260.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2751155..2762837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS12515 - 2751831..2752679 (-) 849 WP_261838257.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCU36_RS12520 - 2752749..2754266 (-) 1518 WP_261838258.1 SPOR domain-containing protein -
  OCU36_RS12525 aroB 2754346..2755434 (-) 1089 WP_261838259.1 3-dehydroquinate synthase -
  OCU36_RS12530 aroK 2755460..2755978 (-) 519 WP_017061125.1 shikimate kinase AroK -
  OCU36_RS12535 pilQ 2756155..2757837 (-) 1683 WP_261838260.1 type IV pilus secretin PilQ Machinery gene
  OCU36_RS12540 pilP 2757898..2758416 (-) 519 WP_261839738.1 pilus assembly protein PilP Machinery gene
  OCU36_RS12545 pilO 2758403..2759014 (-) 612 WP_261838261.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCU36_RS12550 pilN 2759007..2759606 (-) 600 WP_261838262.1 PilN domain-containing protein Machinery gene
  OCU36_RS12555 pilM 2759590..2760615 (-) 1026 WP_261838263.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 61054.68 Da        Isoelectric Point: 4.3969

>NTDB_id=91616 OCU36_RS12535 WP_261838260.1 2756155..2757837(-) (pilQ) [Vibrio artabrorum strain CECT 7226]
MSKGLQGIVLSVMLFFTVMSYAETTNRLENIDFRVNKDQDAVIIIELATSTAVVDVQKVQEGLSIELLNTEVDDDKVNLL
DVKDFATLVAEIEVIREAPSTRLLATITDDYQYEYNLEGRFIEVIVRKPLVKEGEPEKSVLEKKGKLISINFQDIPVRNV
LQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELGE
LTSEIIKINFAKATDIADMIGGESSVSMLSDRGSITIDERTNSLLIRELAENIAVIRSIIESLDIPVKQVQIEARIVTIT
EGNLDELGVRWGVSSTNGSFTVGGSIEGNHRSSIAPYVGNNAVDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDLELSA
LQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV
KTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=91616 OCU36_RS12535 WP_261838260.1 2756155..2757837(-) (pilQ) [Vibrio artabrorum strain CECT 7226]
ATGAGCAAAGGACTGCAAGGTATAGTGTTGTCCGTAATGTTGTTTTTTACAGTAATGAGTTATGCAGAAACCACCAACCG
ATTGGAGAATATCGATTTTAGGGTCAACAAGGATCAAGATGCCGTCATCATTATCGAGCTGGCGACCAGTACCGCTGTCG
TCGATGTTCAAAAAGTTCAAGAAGGGTTGAGTATTGAATTGCTCAATACTGAGGTTGATGACGACAAGGTTAATTTGTTG
GATGTAAAAGACTTTGCCACTTTAGTGGCAGAGATAGAGGTTATTAGAGAGGCGCCAAGTACTCGATTGCTCGCCACAAT
CACTGATGATTATCAATACGAGTACAACCTAGAAGGTCGCTTTATCGAGGTTATCGTGCGTAAGCCTTTAGTTAAAGAAG
GTGAGCCTGAGAAGAGTGTGTTAGAGAAAAAGGGCAAACTCATCTCAATTAACTTTCAAGACATCCCTGTTCGTAATGTT
CTTCAGCTCATTGCTGACTACAACGATTTTAACCTAGTGGTATCTGATTCGGTAGCCGGAAACCTGACTTTACGCTTAGA
TGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTAGATAAACGCGTTGATGGCAATGTTATCT
TGGTTGCGCCCAAAGCCGAACTCGACCTTCGTGAACAGCAAGCGCTAGAGAAATCTCGTTTGGAAGAGGAGTTGGGAGAG
CTGACATCGGAAATCATTAAGATCAACTTTGCTAAAGCCACCGACATTGCCGACATGATTGGTGGTGAGAGTTCGGTGAG
TATGTTGTCTGATCGCGGTTCAATTACGATTGATGAGCGTACCAACTCACTATTGATTCGTGAGCTAGCAGAGAACATTG
CGGTGATACGAAGTATCATTGAATCTTTGGACATTCCTGTGAAGCAAGTGCAGATAGAAGCTCGGATTGTCACCATTACG
GAGGGGAACCTTGATGAGTTAGGGGTGCGTTGGGGTGTTTCCTCAACCAACGGAAGCTTCACTGTTGGCGGATCTATAGA
GGGCAATCACCGCTCTTCAATTGCTCCTTATGTCGGAAATAACGCGGTTGATGATTATCTCAATGTGAACTTGGGAGCGA
CTTCTCCGAACGCGTCGAGTATTGCATTTCAGGTCGCCAAACTCGGTTCTGATACCTTACTCGACCTTGAACTGTCGGCA
CTGCAACAAGAGTCGAAAGCCGAGATTATTTCTAGCCCACGCTTAATCACGACCAACAAAAAGCCCGCTTATATTGAGCA
AGGTACTGAAATCCCTTATTTAGAGTCATCTTCAAGTGGTGCAACATCGGTCGCATTTAAGAAAGCAGTATTGAGCCTCA
AGGTGACACCGCAGATCACTCCAGATAATCGCTTAGTGTTGGATTTAAGTGTGACTCAAGATAGGCCTGGGCAAGTTGTT
AAAACCGGAACGGGTGAAGCCGTGGCCATCAACACTCAAAGGATTGGCACGCAAGTGCTTGTTAATAATGGTGAAACCGT
CGTGCTTGGTGGGATTTTTCAACACAGTGTGAGCAGTACCGTTGATAAAGTTCCTCTGTTGGGAGACCTGCCTGTTTTAG
GCGCATTGTTCCGTCGCAGCTATGAAAATGTCGGCAAAAGTGAACTGCTTATTTTCGTTACACCTAAAGTTGTGATTCAG
TAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(400-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

79.083

97.321

0.77
  pilQ Vibrio cholerae strain A1552

77.437

98.929

0.766
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.437

98.929

0.766
  pilQ Legionella pneumophila strain Lp02

42.78

98.929

0.423
  pilQ Legionella pneumophila strain ERS1305867

42.78

98.929

0.423
  pilQ Pseudomonas aeruginosa PAK

40.569

100

0.407
  comQ Acinetobacter baylyi ADP1

40

100

0.4
  pilQ Acinetobacter baumannii D1279779

36.833

100

0.395
  pilQ Acinetobacter baumannii strain A118

36.833

100

0.395

Multiple sequence alignment