Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AABK27_RS18520 | Genome accession | NZ_AP027899 |
| Coordinates | 3836447..3836887 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360895.1 | Uniprot ID | B7LFX5 |
| Organism | Escherichia coli strain 2018-10-2CC | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3831447..3841887
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABK27_RS18500 (VEE75_35400) | aroP | 3832445..3833818 (+) | 1374 | WP_000969914.1 | aromatic amino acid transporter AroP | - |
| AABK27_RS18505 (VEE75_35410) | ampE | 3833861..3834715 (-) | 855 | WP_000172006.1 | beta-lactamase regulator AmpE | - |
| AABK27_RS18510 (VEE75_35420) | ampD | 3834712..3835263 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AABK27_RS18515 (VEE75_35430) | nadC | 3835351..3836244 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AABK27_RS18520 (VEE75_35440) | pilA | 3836447..3836887 (+) | 441 | WP_000360895.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AABK27_RS18525 (VEE75_35450) | pilB | 3836897..3838282 (+) | 1386 | WP_001025173.1 | type II secretion system protein GspE | Machinery gene |
| AABK27_RS18530 (VEE75_35460) | hofC | 3838272..3839474 (+) | 1203 | WP_338385991.1 | protein transport protein HofC | - |
| AABK27_RS18535 (VEE75_35470) | guaC | 3839509..3840552 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| AABK27_RS18540 | - | 3840708..3840752 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AABK27_RS18545 (VEE75_35480) | coaE | 3840777..3841397 (+) | 621 | WP_001269527.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15602.71 Da Isoelectric Point: 4.3927
>NTDB_id=91619 AABK27_RS18520 WP_000360895.1 3836447..3836887(+) (pilA) [Escherichia coli strain 2018-10-2CC]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=91619 AABK27_RS18520 WP_000360895.1 3836447..3836887(+) (pilA) [Escherichia coli strain 2018-10-2CC]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |