Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   U6038_RS14700 Genome accession   NZ_CP140715
Coordinates   3033989..3036067 (-) Length   692 a.a.
NCBI ID   WP_333654021.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3028989..3041067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14685 (U6038_14685) - 3031455..3032294 (-) 840 WP_236769251.1 hypothetical protein -
  U6038_RS14690 (U6038_14690) aroB 3032302..3033387 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  U6038_RS14695 (U6038_14695) - 3033418..3033900 (-) 483 WP_252715852.1 shikimate kinase -
  U6038_RS14700 (U6038_14700) pilQ 3033989..3036067 (-) 2079 WP_333654021.1 type IV pilus secretin PilQ Machinery gene
  U6038_RS14705 (U6038_14705) pilP 3036087..3036614 (-) 528 WP_130235306.1 pilus assembly protein PilP Machinery gene
  U6038_RS14710 (U6038_14710) pilO 3036614..3037351 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  U6038_RS14715 (U6038_14715) pilN 3037348..3038004 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  U6038_RS14720 (U6038_14720) pilM 3038004..3039062 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75164.45 Da        Isoelectric Point: 5.1447

>NTDB_id=915134 U6038_RS14700 WP_333654021.1 3033989..3036067(-) (pilQ) [Acinetobacter johnsonii strain FAHZZU3110hy]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSIKLSPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTYSATEGLKTEFRAANLKLEVTPSITPDGKVQMALLVEKDSIGAITNDGIAIDTSELQTNVLVDDGETVVLGGIFD
DVKRNDYEKVPFLADLPVVGNLFKNNVKTTMQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=915134 U6038_RS14700 WP_333654021.1 3033989..3036067(-) (pilQ) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGCGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCACAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCGGTGGCAACGGCTGAAGCAAGTACAGTTGATGT
AACTTCAGATGCACAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAACCCAGCGCTAGCAACACCTGTTGCTGCGGCGCGTTCAGAACAAGGCATTTCA
AATATTGGCTTCCAACGCGGTTCAGATGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGTAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCACGCCGTCTCAATGTGA
ATGATTTCGCCACGCCTGTATCGACCATTGATGCACAAAACGATGGTAGTAATGGCCTGATCACAATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACGATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAGCGACGCAATGGTAATGTGATTTGGATTGC
ACCTGTAGCTGAACTGATCAAATCTGAGGAAGATGAAGCCAAAGCCATCGCACAAAGTATTAAGCTTTCACCAATACAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATTGTAACTGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTGGGGGTGGATTTAGCAACAAA
CACGGCTGGTACATTTAACTTCGGGTTATTGAAAATCTCGGATTATATGTTAAACCTTGAGTTAACGGCGCTACAGGCAG
ATGGTCATGGTGAGGTGTTATCAGCACCGAAAGTACTTACTGGCGATAAACAAAAAGCTTATATTTTACGAGGAACAGAG
ATTCCTTATCAAACATATAGCGCGACTGAGGGTTTGAAAACAGAATTCCGTGCGGCTAACTTAAAGCTAGAGGTGACTCC
AAGTATCACGCCTGATGGTAAAGTTCAGATGGCACTCTTGGTTGAGAAAGACTCCATTGGTGCGATTACTAATGATGGTA
TTGCGATTGACACCAGTGAATTACAAACCAATGTCTTGGTAGATGATGGTGAGACGGTTGTACTGGGTGGTATTTTTGAT
GATGTGAAACGTAATGACTATGAAAAAGTGCCATTTCTAGCTGATTTACCAGTGGTGGGGAATTTATTTAAGAACAATGT
CAAAACTACCATGCAAACTGAGTTGTTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

AMIN domain (AMIN)

(55-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.097

100

0.679
  pilQ Acinetobacter baumannii strain A118

64.958

100

0.678
  comQ Acinetobacter baylyi ADP1

62.869

100

0.646
  pilQ Pseudomonas aeruginosa PAK

39.187

99.566

0.39
  pilQ Legionella pneumophila strain Lp02

37.881

99.566

0.377
  pilQ Legionella pneumophila strain ERS1305867

38.166

97.688

0.373