Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U6038_RS14715 Genome accession   NZ_CP140715
Coordinates   3037348..3038004 (-) Length   218 a.a.
NCBI ID   WP_004691498.1    Uniprot ID   A0A380U6M1
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032348..3043004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14695 (U6038_14695) - 3033418..3033900 (-) 483 WP_252715852.1 shikimate kinase -
  U6038_RS14700 (U6038_14700) pilQ 3033989..3036067 (-) 2079 WP_333654021.1 type IV pilus secretin PilQ Machinery gene
  U6038_RS14705 (U6038_14705) pilP 3036087..3036614 (-) 528 WP_130235306.1 pilus assembly protein PilP Machinery gene
  U6038_RS14710 (U6038_14710) pilO 3036614..3037351 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  U6038_RS14715 (U6038_14715) pilN 3037348..3038004 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  U6038_RS14720 (U6038_14720) pilM 3038004..3039062 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  U6038_RS14725 (U6038_14725) ponA 3039228..3041756 (+) 2529 WP_333654027.1 penicillin-binding protein PBP1a -
  U6038_RS14730 (U6038_14730) - 3041788..3042594 (-) 807 WP_333654030.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24225.67 Da        Isoelectric Point: 5.4468

>NTDB_id=915137 U6038_RS14715 WP_004691498.1 3037348..3038004(-) (pilN) [Acinetobacter johnsonii strain FAHZZU3110hy]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=915137 U6038_RS14715 WP_004691498.1 3037348..3038004(-) (pilN) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTAGCTTGGTTCTTTTACAGCCAAAAACTGGAAGATCAAGAGCAAGCCA
ATCAGTTGGTAGTGAGTACCAACCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTCACACCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACGGTTGCGGAATTCTTACGAAATCTCGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U6M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665