Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   U6038_RS14705 Genome accession   NZ_CP140715
Coordinates   3036087..3036614 (-) Length   175 a.a.
NCBI ID   WP_130235306.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3031087..3041614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14685 (U6038_14685) - 3031455..3032294 (-) 840 WP_236769251.1 hypothetical protein -
  U6038_RS14690 (U6038_14690) aroB 3032302..3033387 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  U6038_RS14695 (U6038_14695) - 3033418..3033900 (-) 483 WP_252715852.1 shikimate kinase -
  U6038_RS14700 (U6038_14700) pilQ 3033989..3036067 (-) 2079 WP_333654021.1 type IV pilus secretin PilQ Machinery gene
  U6038_RS14705 (U6038_14705) pilP 3036087..3036614 (-) 528 WP_130235306.1 pilus assembly protein PilP Machinery gene
  U6038_RS14710 (U6038_14710) pilO 3036614..3037351 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  U6038_RS14715 (U6038_14715) pilN 3037348..3038004 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  U6038_RS14720 (U6038_14720) pilM 3038004..3039062 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19357.49 Da        Isoelectric Point: 6.4627

>NTDB_id=915135 U6038_RS14705 WP_130235306.1 3036087..3036614(-) (pilP) [Acinetobacter johnsonii strain FAHZZU3110hy]
MNYQNLMLSLCIGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLVEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=915135 U6038_RS14705 WP_130235306.1 3036087..3036614(-) (pilP) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGAACTATCAAAATCTCATGCTTAGTCTCTGCATTGGACTATTCCTTGTCGGTTGTGATTCGCGTATTGATGCGGTCAA
CATGCAAATGGCCGAAATTCGCAATCAGCCACCATTGCCGATTGAACCTGCGCCAGATTTCCCACCTGTACCGACTTTTA
ATTATGCCGCACATCAATTAAAGAGTCCGTTTATGCCAAGCTCATTAGCGGCTGAACTGAAAATTATGGCTGGAAAACGT
GTCTATCCAAACCTATCTCGCCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTGAACATGAAAGGCAGCATGCG
CGGGCAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGGTTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTGGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

72.571

100

0.726