Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   U6038_RS14710 Genome accession   NZ_CP140715
Coordinates   3036614..3037351 (-) Length   245 a.a.
NCBI ID   WP_130235305.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3031614..3042351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14690 (U6038_14690) aroB 3032302..3033387 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  U6038_RS14695 (U6038_14695) - 3033418..3033900 (-) 483 WP_252715852.1 shikimate kinase -
  U6038_RS14700 (U6038_14700) pilQ 3033989..3036067 (-) 2079 WP_333654021.1 type IV pilus secretin PilQ Machinery gene
  U6038_RS14705 (U6038_14705) pilP 3036087..3036614 (-) 528 WP_130235306.1 pilus assembly protein PilP Machinery gene
  U6038_RS14710 (U6038_14710) pilO 3036614..3037351 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  U6038_RS14715 (U6038_14715) pilN 3037348..3038004 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  U6038_RS14720 (U6038_14720) pilM 3038004..3039062 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  U6038_RS14725 (U6038_14725) ponA 3039228..3041756 (+) 2529 WP_333654027.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27664.16 Da        Isoelectric Point: 5.0201

>NTDB_id=915136 U6038_RS14710 WP_130235305.1 3036614..3037351(-) (pilO) [Acinetobacter johnsonii strain FAHZZU3110hy]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATATTDVDVKDAKNDTKAD
AGGAK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=915136 U6038_RS14710 WP_130235305.1 3036614..3037351(-) (pilO) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAAAAAATGACGGTTGATAAATTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGAGCTTTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAG
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAATTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTTAATCAGCAGTTAGAACAGCTGCCGAAAGAAACTGAAATTCCTGGCTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAACCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCCATTGAAGCGACGGGTGATTATCATTCTTTTGGCTCATTTGTCAGTGGAATTGCAGCTTTACCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAACAATGAGAAAAAGACGGATATTCCTCAAATTTCATACAGTGTAAAAG
CAAAAACCTACCGTTATGTCGGGGCGACGGCTACCACAGATGTTGATGTGAAAGATGCAAAGAATGATACGAAAGCCGAT
GCAGGAGGTGCCAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

74.009

92.653

0.686
  comO Acinetobacter baylyi ADP1

67.623

99.592

0.673